RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 JPH1Q9HDC5 661 aaPredicted RBP23.82■■□□□ 1.4
VPS28-203ENST00000524521 SETD4Q9NVD3 440 aa23.82■■□□□ 1.4
VPS28-203ENST00000524521 SLC9A2Q9UBY0 812 aa23.82■■□□□ 1.4
VPS28-203ENST00000524521 SCN5AQ14524 2016 aa23.81■■□□□ 1.4
VPS28-203ENST00000524521 ZBBXA8MT70 800 aa23.81■■□□□ 1.4
VPS28-203ENST00000524521 GRXCR1A8MXD5 290 aa23.81■■□□□ 1.4
VPS28-203ENST00000524521 CYP3A4P08684 503 aa23.81■■□□□ 1.4
VPS28-203ENST00000524521 CKBP12277 381 aa23.81■■□□□ 1.4
VPS28-203ENST00000524521 NIPA1Q7RTP0 329 aa23.81■■□□□ 1.4
VPS28-203ENST00000524521 GLG1Q92896 1179 aa23.81■■□□□ 1.4
VPS28-203ENST00000524521 IL17RAQ96F46 866 aa23.81■■□□□ 1.4
VPS28-203ENST00000524521 FAM86B1E9PN63 330 aa23.8■■□□□ 1.4
VPS28-203ENST00000524521 PFKFB2O60825 505 aa23.8■■□□□ 1.4
VPS28-203ENST00000524521 CDKL5O76039 1030 aa23.8■■□□□ 1.4
VPS28-203ENST00000524521 FAM86B2P0C5J1 330 aa23.8■■□□□ 1.4
VPS28-203ENST00000524521 GNAT1P11488 350 aa23.8■■□□□ 1.4
VPS28-203ENST00000524521 RBL2Q08999 1139 aa23.8■■□□□ 1.4
VPS28-203ENST00000524521 LRRC8DQ7L1W4 858 aa23.8■■□□□ 1.4
VPS28-203ENST00000524521 CRYGNQ8WXF5 182 aa23.8■■□□□ 1.4
VPS28-203ENST00000524521 WNT8BQ93098 351 aa23.8■■□□□ 1.4
VPS28-203ENST00000524521 SLC4A7Q9Y6M7 1214 aa23.8■■□□□ 1.4
VPS28-203ENST00000524521 NFASCO94856 1347 aa23.8■■□□□ 1.4
VPS28-203ENST00000524521 TREHO43280 583 aa23.79■■□□□ 1.4
VPS28-203ENST00000524521 ACTN1P12814 892 aa23.79■■□□□ 1.4
VPS28-203ENST00000524521 NEK4P51957 841 aa23.79■■□□□ 1.4
VPS28-203ENST00000524521 ITGB3BPQ13352 177 aaPredicted RBP23.79■■□□□ 1.4
VPS28-203ENST00000524521 TRIM71Q2Q1W2 868 aaKnown RBP23.79■■□□□ 1.4
VPS28-203ENST00000524521 SERINC5Q86VE9 423 aa23.79■■□□□ 1.4
VPS28-203ENST00000524521 AIFM3Q96NN9 605 aa23.79■■□□□ 1.4
VPS28-203ENST00000524521 UIMC1Q96RL1 719 aa23.79■■□□□ 1.4
VPS28-203ENST00000524521 SEMA6BQ9H3T3 888 aa23.79■■□□□ 1.4
VPS28-203ENST00000524521 SMARCAD1Q9H4L7 1026 aa23.79■■□□□ 1.4
VPS28-203ENST00000524521 DNAJB2P25686 324 aa23.78■■□□□ 1.4
VPS28-203ENST00000524521 MARK3P27448 753 aa23.78■■□□□ 1.4
VPS28-203ENST00000524521 HOXC8P31273 242 aa23.78■■□□□ 1.4
VPS28-203ENST00000524521 ACTR2P61160 394 aa23.78■■□□□ 1.4
VPS28-203ENST00000524521 ZNF618Q5T7W0 954 aa23.78■■□□□ 1.4
VPS28-203ENST00000524521 ERAP1Q9NZ08 941 aa23.78■■□□□ 1.4
VPS28-203ENST00000524521 IGLV3-22A0A075B6J6 115 aa23.77■■□□□ 1.4
VPS28-203ENST00000524521 DDX39AO00148 427 aaKnown RBP23.77■■□□□ 1.4
VPS28-203ENST00000524521 DTNBO60941 627 aa23.77■■□□□ 1.4
VPS28-203ENST00000524521 PARNO95453 639 aaKnown RBP23.77■■□□□ 1.4
VPS28-203ENST00000524521 THPOP40225 353 aa23.77■■□□□ 1.4
VPS28-203ENST00000524521 AZI2Q9H6S1 392 aa23.77■■□□□ 1.4
VPS28-203ENST00000524521 PCDHA4Q9UN74 947 aa23.77■■□□□ 1.4
VPS28-203ENST00000524521 PBX2P40425 430 aa23.76■■□□□ 1.39
VPS28-203ENST00000524521 GPNMBQ14956 572 aa23.76■■□□□ 1.39
VPS28-203ENST00000524521 PRR16Q569H4 304 aa23.76■■□□□ 1.39
VPS28-203ENST00000524521 BLIDQ8IZY5 108 aa23.76■■□□□ 1.39
VPS28-203ENST00000524521 NECAB1Q8N987 351 aa23.76■■□□□ 1.39
VPS28-203ENST00000524521 LMBR1Q8WVP7 490 aa23.76■■□□□ 1.39
VPS28-203ENST00000524521 PCYT2Q99447 389 aa23.76■■□□□ 1.39
VPS28-203ENST00000524521 ZNF577Q9BSK1 485 aa23.76■■□□□ 1.39
VPS28-203ENST00000524521 PBX4Q9BYU1 374 aa23.76■■□□□ 1.39
VPS28-203ENST00000524521 TTYH1Q9H313 450 aaPredicted RBP23.76■■□□□ 1.39
VPS28-203ENST00000524521 NRCAMQ92823 1304 aa23.76■■□□□ 1.39
VPS28-203ENST00000524521 TANC1Q9C0D5 1861 aa23.75■■□□□ 1.39
VPS28-203ENST00000524521 IPO5O00410 1097 aaKnown RBP23.75■■□□□ 1.39
VPS28-203ENST00000524521 NBNO60934 754 aa23.75■■□□□ 1.39
VPS28-203ENST00000524521 LGR5O75473 907 aa23.75■■□□□ 1.39
VPS28-203ENST00000524521 CIITAP33076 1130 aa23.75■■□□□ 1.39
VPS28-203ENST00000524521 ME3Q16798 604 aa23.75■■□□□ 1.39
VPS28-203ENST00000524521 TIFAQ96CG3 184 aa23.75■■□□□ 1.39
VPS28-203ENST00000524521 GUCD1Q96NT3 240 aa23.75■■□□□ 1.39
VPS28-203ENST00000524521 MSRAQ9UJ68 235 aa23.75■■□□□ 1.39
VPS28-203ENST00000524521 EMSYQ7Z589 1322 aa23.75■■□□□ 1.39
VPS28-203ENST00000524521 RSPH10B2B2RC85 870 aa23.74■■□□□ 1.39
VPS28-203ENST00000524521 DHX15O43143 795 aaKnown RBP23.74■■□□□ 1.39
VPS28-203ENST00000524521 RSPH10BP0C881 870 aa23.74■■□□□ 1.39
VPS28-203ENST00000524521 ATP2A2P16615 1042 aaKnown RBP23.74■■□□□ 1.39
VPS28-203ENST00000524521 STAT5BP51692 787 aa23.74■■□□□ 1.39
VPS28-203ENST00000524521 USP11P51784 963 aa23.74■■□□□ 1.39
VPS28-203ENST00000524521 ADAM17P78536 824 aa23.74■■□□□ 1.39
VPS28-203ENST00000524521 SETQ01105 290 aaPredicted RBP23.74■■□□□ 1.39
VPS28-203ENST00000524521 PPFIA1Q13136 1202 aa23.74■■□□□ 1.39
VPS28-203ENST00000524521 C8orf34Q49A92 452 aa23.74■■□□□ 1.39
VPS28-203ENST00000524521 TRAF7Q6Q0C0 670 aa23.74■■□□□ 1.39
VPS28-203ENST00000524521 FAM177A1Q8N128 213 aaPredicted RBP23.74■■□□□ 1.39
VPS28-203ENST00000524521 TBCKQ8TEA7 893 aa23.74■■□□□ 1.39
VPS28-203ENST00000524521 C22orf23Q9BZE7 217 aa23.74■■□□□ 1.39
VPS28-203ENST00000524521 TBC1D22BQ9NU19 505 aa23.74■■□□□ 1.39
VPS28-203ENST00000524521 KCNJ14Q9UNX9 436 aa23.74■■□□□ 1.39
VPS28-203ENST00000524521 KAT6AQ92794 2004 aa23.74■■□□□ 1.39
VPS28-203ENST00000524521 TET1Q8NFU7 2136 aa23.74■■□□□ 1.39
VPS28-203ENST00000524521 TMEM265A0A087WTH1 108 aa23.73■■□□□ 1.39
VPS28-203ENST00000524521 ATG7O95352 703 aa23.73■■□□□ 1.39
VPS28-203ENST00000524521 LARGE1O95461 756 aa23.73■■□□□ 1.39
VPS28-203ENST00000524521 CTDNEP1O95476 244 aa23.73■■□□□ 1.39
VPS28-203ENST00000524521 CCNE2O96020 404 aa23.73■■□□□ 1.39
VPS28-203ENST00000524521 CXCL10P02778 98 aa23.73■■□□□ 1.39
VPS28-203ENST00000524521 XBP1P17861 261 aa23.73■■□□□ 1.39
VPS28-203ENST00000524521 RAB30Q15771 203 aa23.73■■□□□ 1.39
VPS28-203ENST00000524521 GRIK4Q16099 956 aa23.73■■□□□ 1.39
VPS28-203ENST00000524521 GALNT17Q6IS24 598 aa23.73■■□□□ 1.39
VPS28-203ENST00000524521 DAGLBQ8NCG7 672 aa23.73■■□□□ 1.39
VPS28-203ENST00000524521 ORC3Q9UBD5 711 aaPredicted RBP23.73■■□□□ 1.39
VPS28-203ENST00000524521 STK36Q9NRP7 1315 aa23.73■■□□□ 1.39
VPS28-203ENST00000524521 BACH1O14867 736 aa23.72■■□□□ 1.39
VPS28-203ENST00000524521 EDIL3O43854 480 aa23.72■■□□□ 1.39
VPS28-203ENST00000524521 RABGGTBP53611 331 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms