RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 TCP10Q12799 353 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 SPARCL1Q14515 664 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 PCGF5Q86SE9 256 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 CSRNP1Q96S65 589 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 DNAJC17Q9NVM6 304 aaKnown RBP14.34□□□□□ -0.11
TCOF1-214ENST00000515035 ASAP1Q9ULH1 1129 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 FRMPD2Q68DX3 1309 aaPredicted RBP14.34□□□□□ -0.11
TCOF1-214ENST00000515035 A6NJR5 290 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 LARGE1O95461 756 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 FMNL1O95466 1100 aaPredicted RBP14.34□□□□□ -0.11
TCOF1-214ENST00000515035 ITKQ08881 620 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 MMS19Q96T76 1030 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 OSBPL1AQ9BXW6 950 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 TRIM55Q9BYV6 548 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 CSADQ9Y600 493 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 ABCC3O15438 1527 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 SRGAP2O75044 1071 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 KRT31Q15323 416 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 BBS9Q3SYG4 887 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 DCAF15Q66K64 600 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 FGD4Q96M96 766 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 PPARGC1AQ9UBK2 798 aaKnown RBP14.34□□□□□ -0.11
TCOF1-214ENST00000515035 LOC102724159A0A0B4J2E5 919 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 H0YCG3 227 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 PFDN6O15212 129 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 MYL1P05976 194 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 TMEM191BP0C7N4 346 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 PWP2Q15269 919 aaKnown RBP14.34□□□□□ -0.11
TCOF1-214ENST00000515035 TMEM259Q4ZIN3 620 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 ATG16L1Q676U5 607 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 AS3MTQ9HBK9 375 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 ARHGAP31Q2M1Z3 1444 aa14.34□□□□□ -0.11
TCOF1-214ENST00000515035 EIF4E1BA6NMX2 242 aaKnown RBP14.33□□□□□ -0.11
TCOF1-214ENST00000515035 MCF2LO15068 1137 aa14.33□□□□□ -0.11
TCOF1-214ENST00000515035 FGGP02679 453 aa14.33□□□□□ -0.11
TCOF1-214ENST00000515035 NLRP14Q86W24 1093 aa14.33□□□□□ -0.11
TCOF1-214ENST00000515035 GSPT2Q8IYD1 628 aaKnown RBP14.33□□□□□ -0.11
TCOF1-214ENST00000515035 ADAMTS1Q9UHI8 967 aa14.33□□□□□ -0.11
TCOF1-214ENST00000515035 SOS2Q07890 1332 aaPredicted RBP14.33□□□□□ -0.11
TCOF1-214ENST00000515035 KDM6BO15054 1643 aa14.33□□□□□ -0.11
TCOF1-214ENST00000515035 SPDYE16A6NNV3 312 aaPredicted RBP14.33□□□□□ -0.12
TCOF1-214ENST00000515035 KRT1P04264 644 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 ACTN1P12814 892 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 KRT10P13645 584 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 PCYT1AP49585 367 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 MAGOHP61326 146 aaKnown RBP14.33□□□□□ -0.12
TCOF1-214ENST00000515035 PABPC4Q13310 644 aaKnown RBP eCLIP14.33□□□□□ -0.12
TCOF1-214ENST00000515035 SPDYE2Q495Y8 402 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 C16orf87Q6PH81 154 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 SH3GL3Q99963 347 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 TMEM60Q9H2L4 133 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 NDST4Q9H3R1 872 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 GPHNQ9NQX3 736 aaPredicted RBP14.33□□□□□ -0.12
TCOF1-214ENST00000515035 FIS1Q9Y3D6 152 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 PLS3P13797 630 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 NR5A1Q13285 461 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 ARHGAP27Q6ZUM4 889 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 RAB44Q7Z6P3 723 aaPredicted RBP14.33□□□□□ -0.12
TCOF1-214ENST00000515035 SRLQ86TD4 932 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 ZNF589Q86UQ0 364 aaPredicted RBP14.33□□□□□ -0.12
TCOF1-214ENST00000515035 GLG1Q92896 1179 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 PLEKHF1Q96S99 279 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 EPC1Q9H2F5 836 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 TLK1Q9UKI8 766 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 CLASP1Q7Z460 1538 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 SHROOM2Q13796 1616 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 OCA2Q04671 838 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 EAPPQ56P03 285 aaPredicted RBP14.33□□□□□ -0.12
TCOF1-214ENST00000515035 ALKBH5Q6P6C2 394 aaKnown RBP14.33□□□□□ -0.12
TCOF1-214ENST00000515035 KLC4Q9NSK0 619 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 NOD1Q9Y239 953 aa14.33□□□□□ -0.12
TCOF1-214ENST00000515035 ARAP3Q8WWN8 1544 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 PIK3CAP42336 1068 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 DYNLT1P63172 113 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 ZBTB8OSQ8IWT0 167 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 GCNT4Q9P109 453 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 CDC25AP30304 524 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 PRKG1Q13976 671 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 HP1BP3Q5SSJ5 553 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-214ENST00000515035 ZMYM1Q5SVZ6 1142 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 BRINP3Q76B58 766 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 MB21D1Q8N884 522 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 CEP19Q96LK0 163 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 IPO11Q9UI26 975 aaKnown RBP14.32□□□□□ -0.12
TCOF1-214ENST00000515035 SNX24Q9Y343 169 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 PCDHB4Q9Y5E5 795 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 SYNMO15061 1565 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 ANO9A1A5B4 782 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 TESPA1A2RU30 521 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-214ENST00000515035 DMP1Q13316 513 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-214ENST00000515035 RASGRP4Q8TDF6 673 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 IQANK1A0A1B0GTG1 560 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 MAN1A2O60476 641 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 MMP1P03956 469 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 PPP2R2AP63151 447 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 MDM2Q00987 491 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-214ENST00000515035 PDIK1LQ8N165 341 aa14.32□□□□□ -0.12
TCOF1-214ENST00000515035 IPO5O00410 1097 aaKnown RBP14.31□□□□□ -0.12
TCOF1-214ENST00000515035 MCF2P10911 925 aa14.31□□□□□ -0.12
TCOF1-214ENST00000515035 CENPUQ71F23 418 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms