RNA–Protein interactions for RNA: ENST00000505066.5

DDR1-256, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 4

Gene DDR1, Length 556 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-256	ENST00000505066	RTN1	Q16799	776 aa		18.73	■□□□□ 0.59
DDR1-256	ENST00000505066	SGMS1	Q86VZ5	419 aa		18.73	■□□□□ 0.59
DDR1-256	ENST00000505066	TRIM50	Q86XT4	487 aa		18.73	■□□□□ 0.59
DDR1-256	ENST00000505066	GDPD5	Q8WTR4	605 aa		18.73	■□□□□ 0.59
DDR1-256	ENST00000505066	LMBR1	Q8WVP7	490 aa		18.73	■□□□□ 0.59
DDR1-256	ENST00000505066	C1QTNF1	Q9BXJ1	281 aa		18.73	■□□□□ 0.59
DDR1-256	ENST00000505066	JPH1	Q9HDC5	661 aa	Predicted RBP	18.73	■□□□□ 0.59
DDR1-256	ENST00000505066	TRPC6	Q9Y210	931 aa		18.73	■□□□□ 0.59
DDR1-256	ENST00000505066	TFF2	Q03403	129 aa		18.72	■□□□□ 0.59
DDR1-256	ENST00000505066	NECTIN1	Q15223	517 aa		18.72	■□□□□ 0.59
DDR1-256	ENST00000505066	UBE2S	Q16763	222 aa		18.72	■□□□□ 0.59
DDR1-256	ENST00000505066	IER5	Q5VY09	327 aa		18.72	■□□□□ 0.59
DDR1-256	ENST00000505066	MCTP2	Q6DN12	878 aa		18.72	■□□□□ 0.59
DDR1-256	ENST00000505066	DHX32	Q7L7V1	743 aa	Known RBP	18.72	■□□□□ 0.59
DDR1-256	ENST00000505066	RAB11FIP4	Q86YS3	637 aa		18.72	■□□□□ 0.59
DDR1-256	ENST00000505066	WNT8B	Q93098	351 aa		18.72	■□□□□ 0.59
DDR1-256	ENST00000505066	LRRC2	Q9BYS8	371 aa		18.72	■□□□□ 0.59
DDR1-256	ENST00000505066	JADE2	Q9NQC1	790 aa		18.72	■□□□□ 0.59
DDR1-256	ENST00000505066	TUBE1	Q9UJT0	475 aa		18.72	■□□□□ 0.59
DDR1-256	ENST00000505066	RWDD3	Q9Y3V2	267 aa		18.72	■□□□□ 0.59
DDR1-256	ENST00000505066	hCG_1642624	A0A1W2PR95	340 aa		18.71	■□□□□ 0.59
DDR1-256	ENST00000505066	EPOP	A6NHQ4	379 aa		18.71	■□□□□ 0.59
DDR1-256	ENST00000505066	CDC45	O75419	566 aa		18.71	■□□□□ 0.59
DDR1-256	ENST00000505066	MARK3	P27448	753 aa		18.71	■□□□□ 0.59
DDR1-256	ENST00000505066	HOXC8	P31273	242 aa		18.71	■□□□□ 0.59
DDR1-256	ENST00000505066	AKAP17A	Q02040	695 aa	Known RBP	18.71	■□□□□ 0.59
DDR1-256	ENST00000505066	SEMA3F	Q13275	785 aa		18.71	■□□□□ 0.59
DDR1-256	ENST00000505066	MBTPS1	Q14703	1052 aa		18.71	■□□□□ 0.59
DDR1-256	ENST00000505066	GRIK4	Q16099	956 aa		18.71	■□□□□ 0.59
DDR1-256	ENST00000505066	TRAF7	Q6Q0C0	670 aa		18.71	■□□□□ 0.59
DDR1-256	ENST00000505066	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	18.71	■□□□□ 0.59
DDR1-256	ENST00000505066	CCDC12	Q8WUD4	166 aa	Predicted RBP	18.71	■□□□□ 0.59
DDR1-256	ENST00000505066	IL17RA	Q96F46	866 aa		18.71	■□□□□ 0.59
DDR1-256	ENST00000505066	SUGCT	Q9HAC7	445 aa		18.71	■□□□□ 0.59
DDR1-256	ENST00000505066	RNF216	Q9NWF9	866 aa	Predicted RBP	18.71	■□□□□ 0.59
DDR1-256	ENST00000505066	SLC9A2	Q9UBY0	812 aa		18.71	■□□□□ 0.59
DDR1-256	ENST00000505066	FAM50B	Q9Y247	325 aa		18.71	■□□□□ 0.59
DDR1-256	ENST00000505066	GOLGA8A	A7E2F4	631 aa		18.7	■□□□□ 0.58
DDR1-256	ENST00000505066	GOLGA8B	A8MQT2	603 aa		18.7	■□□□□ 0.58
DDR1-256	ENST00000505066	BMP1	P13497	986 aa		18.7	■□□□□ 0.58
DDR1-256	ENST00000505066	IGBP1	P78318	339 aa		18.7	■□□□□ 0.58
DDR1-256	ENST00000505066	TIGD5	Q53EQ6	642 aa		18.7	■□□□□ 0.58
DDR1-256	ENST00000505066	APOA5	Q6Q788	366 aa		18.7	■□□□□ 0.58
DDR1-256	ENST00000505066	FIBCD1	Q8N539	461 aa		18.7	■□□□□ 0.58
DDR1-256	ENST00000505066	TOP1MT	Q969P6	601 aa		18.7	■□□□□ 0.58
DDR1-256	ENST00000505066	BCAS3	Q9H6U6	928 aa		18.7	■□□□□ 0.58
DDR1-256	ENST00000505066	RIC8A	Q9NPQ8	531 aa		18.7	■□□□□ 0.58
DDR1-256	ENST00000505066	UBIAD1	Q9Y5Z9	338 aa		18.7	■□□□□ 0.58
DDR1-256	ENST00000505066	MYH6	P13533	1939 aa		18.69	■□□□□ 0.58
DDR1-256	ENST00000505066	KCNA2	P16389	499 aa		18.69	■□□□□ 0.58
DDR1-256	ENST00000505066	ITGB5	P18084	799 aa		18.69	■□□□□ 0.58
DDR1-256	ENST00000505066	KCNQ1	P51787	676 aa		18.69	■□□□□ 0.58
DDR1-256	ENST00000505066	AP3B2	Q13367	1082 aa		18.69	■□□□□ 0.58
DDR1-256	ENST00000505066	HIC1	Q14526	733 aa		18.69	■□□□□ 0.58
DDR1-256	ENST00000505066	FAM26D	Q5JW98	314 aa		18.69	■□□□□ 0.58
DDR1-256	ENST00000505066	FAM160B1	Q5W0V3	765 aa		18.69	■□□□□ 0.58
DDR1-256	ENST00000505066	KRT40	Q6A162	431 aa		18.69	■□□□□ 0.58
DDR1-256	ENST00000505066	RPAIN	Q86UA6	219 aa		18.69	■□□□□ 0.58
DDR1-256	ENST00000505066	MXRA8	Q9BRK3	442 aa		18.69	■□□□□ 0.58
DDR1-256	ENST00000505066		V9GY48	417 aa	Predicted RBP	18.69	■□□□□ 0.58
DDR1-256	ENST00000505066	MYO9B	Q13459	2157 aa		18.69	■□□□□ 0.58
DDR1-256	ENST00000505066	KLF18	A0A0U1RQI7	1052 aa		18.68	■□□□□ 0.58
DDR1-256	ENST00000505066	SMCO2	A6NFE2	343 aa		18.68	■□□□□ 0.58
DDR1-256	ENST00000505066	BACH1	O14867	736 aa		18.68	■□□□□ 0.58
DDR1-256	ENST00000505066	ARHGEF15	O94989	841 aa		18.68	■□□□□ 0.58
DDR1-256	ENST00000505066	GHR	P10912	638 aa		18.68	■□□□□ 0.58
DDR1-256	ENST00000505066	SLC26A2	P50443	739 aa		18.68	■□□□□ 0.58
DDR1-256	ENST00000505066	HTRA4	P83105	476 aa	Predicted RBP	18.68	■□□□□ 0.58
DDR1-256	ENST00000505066	GPM6B	Q13491	265 aa		18.68	■□□□□ 0.58
DDR1-256	ENST00000505066	PUS10	Q3MIT2	529 aa	Known RBP	18.68	■□□□□ 0.58
DDR1-256	ENST00000505066	ODR4	Q5SWX8	454 aa		18.68	■□□□□ 0.58
DDR1-256	ENST00000505066	EP400NL	Q6ZTU2	488 aa		18.68	■□□□□ 0.58
DDR1-256	ENST00000505066	MRPL38	Q96DV4	380 aa	Known RBP	18.68	■□□□□ 0.58
DDR1-256	ENST00000505066	KCNH7	Q9NS40	1196 aa		18.68	■□□□□ 0.58
DDR1-256	ENST00000505066	TANC1	Q9C0D5	1861 aa		18.68	■□□□□ 0.58
DDR1-256	ENST00000505066	KIAA1217	Q5T5P2	1943 aa		18.68	■□□□□ 0.58
DDR1-256	ENST00000505066	TTC28	Q96AY4	2481 aa		18.67	■□□□□ 0.58
DDR1-256	ENST00000505066	NCK2	O43639	380 aa		18.67	■□□□□ 0.58
DDR1-256	ENST00000505066	ATP9A	O75110	1047 aa		18.67	■□□□□ 0.58
DDR1-256	ENST00000505066	STAT5B	P51692	787 aa		18.67	■□□□□ 0.58
DDR1-256	ENST00000505066	RCAN1	P53805	252 aa		18.67	■□□□□ 0.58
DDR1-256	ENST00000505066	EPC2	Q52LR7	807 aa		18.67	■□□□□ 0.58
DDR1-256	ENST00000505066	CEP55	Q53EZ4	464 aa		18.67	■□□□□ 0.58
DDR1-256	ENST00000505066	FAM43B	Q6ZT52	329 aa	Predicted RBP	18.67	■□□□□ 0.58
DDR1-256	ENST00000505066	TMEM192	Q8IY95	271 aa		18.67	■□□□□ 0.58
DDR1-256	ENST00000505066	PPP2R3C	Q969Q6	453 aa		18.67	■□□□□ 0.58
DDR1-256	ENST00000505066	C17orf80	Q9BSJ5	609 aa		18.67	■□□□□ 0.58
DDR1-256	ENST00000505066	C11orf84	Q9BUA3	381 aa	Predicted RBP	18.67	■□□□□ 0.58
DDR1-256	ENST00000505066	FTHL17	Q9BXU8	183 aa		18.67	■□□□□ 0.58
DDR1-256	ENST00000505066	FAM49A	Q9H0Q0	323 aa	Predicted RBP	18.67	■□□□□ 0.58
DDR1-256	ENST00000505066	UNC80	Q8N2C7	3258 aa		18.66	■□□□□ 0.58
DDR1-256	ENST00000505066	GSTTP1	A0A1W2PQM5	241 aa		18.66	■□□□□ 0.58
DDR1-256	ENST00000505066	STAG3L1	P0CL83	205 aa		18.66	■□□□□ 0.58
DDR1-256	ENST00000505066	CTNNB1	P35222	781 aa		18.66	■□□□□ 0.58
DDR1-256	ENST00000505066	METAP2	P50579	478 aa	Known RBP eCLIP	18.66	■□□□□ 0.58	3e-6	■■■■□ 25.7
DDR1-256	ENST00000505066	MRPS6	P82932	125 aa	Known RBP	18.66	■□□□□ 0.58
DDR1-256	ENST00000505066	TCTN1	Q2MV58	587 aa		18.66	■□□□□ 0.58
DDR1-256	ENST00000505066	WWC2	Q6AWC2	1192 aa		18.66	■□□□□ 0.58
DDR1-256	ENST00000505066	TSHZ1	Q6ZSZ6	1077 aa		18.66	■□□□□ 0.58
DDR1-256	ENST00000505066	PLPPR4	Q7Z2D5	763 aa		18.66	■□□□□ 0.58

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