RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 NTSR2O95665 410 aa6.18□□□□□ -1.42
CSMD3-208ENST00000497026 GPTP24298 496 aa6.18□□□□□ -1.42
CSMD3-208ENST00000497026 ZNF165P49910 485 aa6.18□□□□□ -1.42
CSMD3-208ENST00000497026 RNF4P78317 190 aa6.18□□□□□ -1.42
CSMD3-208ENST00000497026 NBPF9Q3BBW0 867 aa6.18□□□□□ -1.42
CSMD3-208ENST00000497026 SUSD4Q5VX71 490 aa6.18□□□□□ -1.42
CSMD3-208ENST00000497026 CDCP2Q5VXM1 449 aa6.18□□□□□ -1.42
CSMD3-208ENST00000497026 KRTAP5-3Q6L8H2 238 aa6.18□□□□□ -1.42
CSMD3-208ENST00000497026 ZPBP2Q6X784 338 aa6.18□□□□□ -1.42
CSMD3-208ENST00000497026 TMEM192Q8IY95 271 aa6.18□□□□□ -1.42
CSMD3-208ENST00000497026 PDZD8Q8NEN9 1154 aa6.18□□□□□ -1.42
CSMD3-208ENST00000497026 IPO9Q96P70 1041 aaKnown RBP6.18□□□□□ -1.42
CSMD3-208ENST00000497026 NT5C1AQ9BXI3 368 aa6.18□□□□□ -1.42
CSMD3-208ENST00000497026 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.18□□□□□ -1.42
CSMD3-208ENST00000497026 DBF4Q9UBU7 674 aaPredicted RBP6.18□□□□□ -1.42
CSMD3-208ENST00000497026 CACNA1FO60840 1977 aa6.18□□□□□ -1.42
CSMD3-208ENST00000497026 SNED1Q8TER0 1413 aa6.18□□□□□ -1.42
CSMD3-208ENST00000497026 COL4A1P02462 1669 aa6.18□□□□□ -1.42
CSMD3-208ENST00000497026 KLRG2A4D1S0 409 aaPredicted RBP6.17□□□□□ -1.42
CSMD3-208ENST00000497026 H0YIN7 160 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 CLEC3AO75596 197 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 C1QTNF9P0C862 333 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 SRGNP10124 158 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 NME1P15531 152 aaKnown RBP6.17□□□□□ -1.42
CSMD3-208ENST00000497026 RAP1GAPP47736 663 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 PRELPP51888 382 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 ST5P78524 1137 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 AIMP1Q12904 312 aaKnown RBP6.17□□□□□ -1.42
CSMD3-208ENST00000497026 DALRD3Q5D0E6 543 aaKnown RBP6.17□□□□□ -1.42
CSMD3-208ENST00000497026 USP48Q86UV5 1035 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 NBPF5PQ86XG9 351 aaPredicted RBP6.17□□□□□ -1.42
CSMD3-208ENST00000497026 C2CD5Q86YS7 1000 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 WDR63Q8IWG1 891 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 SIRT2Q8IXJ6 389 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 REXO1Q8N1G1 1221 aaKnown RBP6.17□□□□□ -1.42
CSMD3-208ENST00000497026 OXR1Q8N573 874 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 FBXO15Q8NCQ5 510 aaPredicted RBP6.17□□□□□ -1.42
CSMD3-208ENST00000497026 DHX38Q92620 1227 aaKnown RBP6.17□□□□□ -1.42
CSMD3-208ENST00000497026 TCTN2Q96GX1 697 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 HDAC8Q9BY41 377 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 PRDM14Q9GZV8 571 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 EPB41L4BQ9H329 900 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 PHAXQ9H814 394 aaKnown RBP6.17□□□□□ -1.42
CSMD3-208ENST00000497026 GPR160Q9UJ42 338 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 TAF1P21675 1872 aa6.17□□□□□ -1.42
CSMD3-208ENST00000497026 DICER1Q9UPY3 1922 aaKnown RBP6.17□□□□□ -1.42
CSMD3-208ENST00000497026 KRTAP9-7A8MTY7 169 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 TCERG1O14776 1098 aaKnown RBP6.16□□□□□ -1.42
CSMD3-208ENST00000497026 PSPNO60542 156 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 PRAMEF1O95521 474 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 PDE6BP35913 854 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 FANCCQ00597 558 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 TWISTNBQ3B726 338 aaPredicted RBP6.16□□□□□ -1.42
CSMD3-208ENST00000497026 CRY2Q49AN0 593 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 NLRP10Q86W26 655 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 SLITRK4Q8IW52 837 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 PLBD2Q8NHP8 589 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 SYTL5Q8TDW5 730 aaPredicted RBP6.16□□□□□ -1.42
CSMD3-208ENST00000497026 SLC6A18Q96N87 628 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 SLC9A7Q96T83 725 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 ZMYM5Q9UJ78 669 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 LRRC37AA6NMS7 1700 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 SSU72P8A0A1W2PR75 194 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 FITM1A5D6W6 292 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 NPHP1O15259 732 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 VAMP4O75379 141 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 USP2O75604 605 aaPredicted RBP6.16□□□□□ -1.42
CSMD3-208ENST00000497026 EFEMP2O95967 443 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 KRT1P04264 644 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 SYPP08247 313 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 EXOSC9Q06265 439 aaKnown RBP6.16□□□□□ -1.42
CSMD3-208ENST00000497026 TCIRG1Q13488 830 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 PARP10Q53GL7 1025 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 CCDC30Q5VVM6 783 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 FBXW10Q5XX13 1052 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 STYK1Q6J9G0 422 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 G2E3Q7L622 706 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 SYNE4Q8N205 404 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 TTLL6Q8N841 843 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 ZNF622Q969S3 477 aaKnown RBP eCLIP6.16□□□□□ -1.42
CSMD3-208ENST00000497026 ZNF428Q96B54 188 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 MASTLQ96GX5 879 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 ISCA1Q9BUE6 129 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 NYXQ9GZU5 481 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 MKRN2Q9H000 416 aaKnown RBP6.16□□□□□ -1.42
CSMD3-208ENST00000497026 HYPKQ9NX55 129 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 FBXL21Q9UKT6 434 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 TCFL5Q9UL49 500 aa6.16□□□□□ -1.42
CSMD3-208ENST00000497026 DUSP4Q13115 394 aa6.15□□□□□ -1.43
CSMD3-208ENST00000497026 HSP90AB3PQ58FF7 597 aa6.15□□□□□ -1.43
CSMD3-208ENST00000497026 OLFM4Q6UX06 510 aa6.15□□□□□ -1.43
CSMD3-208ENST00000497026 ZNF605Q86T29 641 aa6.15□□□□□ -1.43
CSMD3-208ENST00000497026 DAGLBQ8NCG7 672 aa6.15□□□□□ -1.43
CSMD3-208ENST00000497026 ENOX1Q8TC92 643 aaKnown RBP6.15□□□□□ -1.43
CSMD3-208ENST00000497026 G6PC3Q9BUM1 346 aa6.15□□□□□ -1.43
CSMD3-208ENST00000497026 FAM86C1Q9NVL1 165 aa6.15□□□□□ -1.43
CSMD3-208ENST00000497026 GFOD1Q9NXC2 390 aa6.15□□□□□ -1.43
CSMD3-208ENST00000497026 MYH3P11055 1940 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 RNF123Q5XPI4 1314 aa6.14□□□□□ -1.43
CSMD3-208ENST00000497026 TMEM82A0PJX8 343 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms