RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 CATSPER3Q86XQ3 398 aa14.2□□□□□ -0.14
VPS52-220ENST00000493674 CEP57L1Q8IYX8 460 aa14.2□□□□□ -0.14
VPS52-220ENST00000493674 RDM1Q8NG50 284 aa14.2□□□□□ -0.14
VPS52-220ENST00000493674 NEK9Q8TD19 979 aa14.2□□□□□ -0.14
VPS52-220ENST00000493674 EIF2AK1Q9BQI3 630 aaKnown RBP14.2□□□□□ -0.14
VPS52-220ENST00000493674 NT5C3AQ9H0P0 336 aa14.2□□□□□ -0.14
VPS52-220ENST00000493674 EVPLQ92817 2033 aa14.2□□□□□ -0.14
VPS52-220ENST00000493674 SYNGAP1Q96PV0 1343 aa14.19□□□□□ -0.14
VPS52-220ENST00000493674 RBM47A0AV96 593 aaKnown RBP14.19□□□□□ -0.14
VPS52-220ENST00000493674 GTPBP6O43824 516 aaPredicted RBP14.19□□□□□ -0.14
VPS52-220ENST00000493674 TRPA1O75762 1119 aa14.19□□□□□ -0.14
VPS52-220ENST00000493674 MYL1P05976 194 aa14.19□□□□□ -0.14
VPS52-220ENST00000493674 TGFB3P10600 412 aa14.19□□□□□ -0.14
VPS52-220ENST00000493674 CTGFP29279 349 aa14.19□□□□□ -0.14
VPS52-220ENST00000493674 SP2Q02086 613 aa14.19□□□□□ -0.14
VPS52-220ENST00000493674 IRF5Q13568 498 aa14.19□□□□□ -0.14
VPS52-220ENST00000493674 ZNF746Q6NUN9 644 aaPredicted RBP14.19□□□□□ -0.14
VPS52-220ENST00000493674 CNNM4Q6P4Q7 775 aa14.19□□□□□ -0.14
VPS52-220ENST00000493674 CCDC62Q6P9F0 684 aa14.19□□□□□ -0.14
VPS52-220ENST00000493674 ARMCX2Q7L311 632 aa14.19□□□□□ -0.14
VPS52-220ENST00000493674 GRAMD1CQ8IYS0 662 aa14.19□□□□□ -0.14
VPS52-220ENST00000493674 MSL3Q8N5Y2 521 aaKnown RBP14.19□□□□□ -0.14
VPS52-220ENST00000493674 RAD54LQ92698 747 aa14.19□□□□□ -0.14
VPS52-220ENST00000493674 CCDC34Q96HJ3 373 aa14.19□□□□□ -0.14
VPS52-220ENST00000493674 MAML3Q96JK9 1138 aa14.19□□□□□ -0.14
VPS52-220ENST00000493674 HOOK1Q9UJC3 728 aaKnown RBP14.19□□□□□ -0.14
VPS52-220ENST00000493674 SLITRK3O94933 977 aa14.18□□□□□ -0.14
VPS52-220ENST00000493674 CCDC192P0DO97 292 aa14.18□□□□□ -0.14
VPS52-220ENST00000493674 UBA1P22314 1058 aaKnown RBP14.18□□□□□ -0.14
VPS52-220ENST00000493674 SFNP31947 248 aa14.18□□□□□ -0.14
VPS52-220ENST00000493674 JAK3P52333 1124 aa14.18□□□□□ -0.14
VPS52-220ENST00000493674 LBX1P52954 281 aa14.18□□□□□ -0.14
VPS52-220ENST00000493674 TYRO3Q06418 890 aa14.18□□□□□ -0.14
VPS52-220ENST00000493674 MAP2K5Q13163 448 aa14.18□□□□□ -0.14
VPS52-220ENST00000493674 GSE1Q14687 1217 aa14.18□□□□□ -0.14
VPS52-220ENST00000493674 KCNV1Q6PIU1 500 aa14.18□□□□□ -0.14
VPS52-220ENST00000493674 NPLOC4Q8TAT6 608 aa14.18□□□□□ -0.14
VPS52-220ENST00000493674 LARP4BQ92615 738 aaKnown RBP14.18□□□□□ -0.14
VPS52-220ENST00000493674 ERCC4Q92889 916 aaPredicted RBP14.18□□□□□ -0.14
VPS52-220ENST00000493674 CDK5RAP3Q96JB5 506 aa14.18□□□□□ -0.14
VPS52-220ENST00000493674 VTA1Q9NP79 307 aa14.18□□□□□ -0.14
VPS52-220ENST00000493674 PKD2L1Q9P0L9 805 aa14.18□□□□□ -0.14
VPS52-220ENST00000493674 GJD2Q9UKL4 321 aa14.18□□□□□ -0.14
VPS52-220ENST00000493674 PCDHA5Q9Y5H7 936 aa14.18□□□□□ -0.14
VPS52-220ENST00000493674 POTEFA5A3E0 1075 aa14.17□□□□□ -0.14
VPS52-220ENST00000493674 WDR64B1ANS9 1081 aa14.17□□□□□ -0.14
VPS52-220ENST00000493674 CHMP2AO43633 222 aa14.17□□□□□ -0.14
VPS52-220ENST00000493674 LYPLA2O95372 231 aa14.17□□□□□ -0.14
VPS52-220ENST00000493674 SNAI1O95863 264 aaPredicted RBP14.17□□□□□ -0.14
VPS52-220ENST00000493674 POTEGQ6S5H5 508 aa14.17□□□□□ -0.14
VPS52-220ENST00000493674 SEPT14Q6ZU15 432 aa14.17□□□□□ -0.14
VPS52-220ENST00000493674 MIER3Q7Z3K6 550 aa14.17□□□□□ -0.14
VPS52-220ENST00000493674 SMAP1Q8IYB5 467 aaPredicted RBP14.17□□□□□ -0.14
VPS52-220ENST00000493674 TRIML1Q8N9V2 468 aa14.17□□□□□ -0.14
VPS52-220ENST00000493674 GIMAP8Q8ND71 665 aaPredicted RBP14.17□□□□□ -0.14
VPS52-220ENST00000493674 RASSF8Q8NHQ8 419 aa14.17□□□□□ -0.14
VPS52-220ENST00000493674 SOCS4Q8WXH5 440 aa14.17□□□□□ -0.14
VPS52-220ENST00000493674 DYDC2Q96IM9 177 aa14.17□□□□□ -0.14
VPS52-220ENST00000493674 PLIN2Q99541 437 aa14.17□□□□□ -0.14
VPS52-220ENST00000493674 C7orf25Q9BPX7 421 aa14.17□□□□□ -0.14
VPS52-220ENST00000493674 TSPY26PQ9H489 355 aa14.17□□□□□ -0.14
VPS52-220ENST00000493674 BCAS3Q9H6U6 928 aa14.17□□□□□ -0.14
VPS52-220ENST00000493674 JPH1Q9HDC5 661 aaPredicted RBP14.17□□□□□ -0.14
VPS52-220ENST00000493674 RGL1Q9NZL6 768 aa14.17□□□□□ -0.14
VPS52-220ENST00000493674 WRAP73Q9P2S5 460 aaPredicted RBP14.17□□□□□ -0.14
VPS52-220ENST00000493674 DDX41Q9UJV9 622 aaKnown RBP14.17□□□□□ -0.14
VPS52-220ENST00000493674 KIAA1024Q9UPX6 916 aa14.17□□□□□ -0.14
VPS52-220ENST00000493674 DDX39AO00148 427 aaKnown RBP14.16□□□□□ -0.14
VPS52-220ENST00000493674 KLRC4O43908 158 aa14.16□□□□□ -0.14
VPS52-220ENST00000493674 FARP2O94887 1054 aaPredicted RBP14.16□□□□□ -0.14
VPS52-220ENST00000493674 ATG7O95352 703 aa14.16□□□□□ -0.14
VPS52-220ENST00000493674 ARIH2O95376 493 aa14.16□□□□□ -0.14
VPS52-220ENST00000493674 AFMP43652 599 aa14.16□□□□□ -0.14
VPS52-220ENST00000493674 LACTBP83111 547 aaPredicted RBP14.16□□□□□ -0.14
VPS52-220ENST00000493674 CUL4BQ13620 913 aa14.16□□□□□ -0.14
VPS52-220ENST00000493674 ZRSR1Q15695 479 aaKnown RBP14.16□□□□□ -0.14
VPS52-220ENST00000493674 STX1AQ16623 288 aa14.16□□□□□ -0.14
VPS52-220ENST00000493674 TAPT1Q6NXT6 567 aa14.16□□□□□ -0.14
VPS52-220ENST00000493674 DPP9Q86TI2 863 aa14.16□□□□□ -0.14
VPS52-220ENST00000493674 FBXO16Q8IX29 292 aaPredicted RBP14.16□□□□□ -0.14
VPS52-220ENST00000493674 GSDMAQ96QA5 445 aa14.16□□□□□ -0.14
VPS52-220ENST00000493674 TINF2Q9BSI4 451 aa14.16□□□□□ -0.14
VPS52-220ENST00000493674 TRIM9Q9C026 710 aa14.16□□□□□ -0.14
VPS52-220ENST00000493674 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.16□□□□□ -0.14
VPS52-220ENST00000493674 SLC5A4Q9NY91 659 aa14.16□□□□□ -0.14
VPS52-220ENST00000493674 SLC9A2Q9UBY0 812 aa14.16□□□□□ -0.14
VPS52-220ENST00000493674 MAN1B1Q9UKM7 699 aa14.16□□□□□ -0.14
VPS52-220ENST00000493674 IGSF9BQ9UPX0 1349 aa14.15□□□□□ -0.14
VPS52-220ENST00000493674 TRIP12Q14669 1992 aaPredicted RBP14.15□□□□□ -0.14
VPS52-220ENST00000493674 IGKV6D-21A0A0A0MT36 114 aa14.15□□□□□ -0.14
VPS52-220ENST00000493674 E9PMD0 336 aa14.15□□□□□ -0.14
VPS52-220ENST00000493674 SMC2O95347 1197 aa14.15□□□□□ -0.14
VPS52-220ENST00000493674 EYA4O95677 639 aa14.15□□□□□ -0.14
VPS52-220ENST00000493674 P4HBP07237 508 aaKnown RBP14.15□□□□□ -0.14
VPS52-220ENST00000493674 BMP6P22004 513 aa14.15□□□□□ -0.14
VPS52-220ENST00000493674 CASP1P29466 404 aa14.15□□□□□ -0.14
VPS52-220ENST00000493674 SLC12A3P55017 1021 aa14.15□□□□□ -0.14
VPS52-220ENST00000493674 NLRP12P59046 1061 aa14.15□□□□□ -0.14
VPS52-220ENST00000493674 PSMC6P62333 389 aa14.15□□□□□ -0.14
VPS52-220ENST00000493674 CYP4A11Q02928 519 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms