RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 SCN5AQ14524 2016 aa13.3□□□□□ -0.28
COL6A3-213ENST00000493475 LCHNA4D1U4 455 aa13.29□□□□□ -0.28
COL6A3-213ENST00000493475 M0QZ92 97 aa13.29□□□□□ -0.28
COL6A3-213ENST00000493475 TREHO43280 583 aa13.29□□□□□ -0.28
COL6A3-213ENST00000493475 CYTH3O43739 400 aa13.29□□□□□ -0.28
COL6A3-213ENST00000493475 PDE4AP27815 886 aa13.29□□□□□ -0.28
COL6A3-213ENST00000493475 KCNQ1P51787 676 aa13.29□□□□□ -0.28
COL6A3-213ENST00000493475 ZNF200P98182 395 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-213ENST00000493475 SP4Q02446 784 aa13.29□□□□□ -0.28
COL6A3-213ENST00000493475 MB21D2Q8IYB1 491 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-213ENST00000493475 IGDCC4Q8TDY8 1250 aa13.29□□□□□ -0.28
COL6A3-213ENST00000493475 GLG1Q92896 1179 aa13.29□□□□□ -0.28
COL6A3-213ENST00000493475 IFIH1Q9BYX4 1025 aaKnown RBP13.29□□□□□ -0.28
COL6A3-213ENST00000493475 RNPEPQ9H4A4 650 aa13.29□□□□□ -0.28
COL6A3-213ENST00000493475 AZI2Q9H6S1 392 aa13.29□□□□□ -0.28
COL6A3-213ENST00000493475 SUGCTQ9HAC7 445 aa13.29□□□□□ -0.28
COL6A3-213ENST00000493475 ERAP1Q9NZ08 941 aa13.29□□□□□ -0.28
COL6A3-213ENST00000493475 HCN4Q9Y3Q4 1203 aa13.29□□□□□ -0.28
COL6A3-213ENST00000493475 EPOPA6NHQ4 379 aa13.28□□□□□ -0.28
COL6A3-213ENST00000493475 NCK2O43639 380 aa13.28□□□□□ -0.28
COL6A3-213ENST00000493475 CTSHP09668 335 aa13.28□□□□□ -0.28
COL6A3-213ENST00000493475 HOXC8P31273 242 aa13.28□□□□□ -0.28
COL6A3-213ENST00000493475 LIFRP42702 1097 aa13.28□□□□□ -0.28
COL6A3-213ENST00000493475 MRPS9P82933 396 aaKnown RBP13.28□□□□□ -0.28
COL6A3-213ENST00000493475 MTMR1Q13613 665 aa13.28□□□□□ -0.28
COL6A3-213ENST00000493475 GPNMBQ14956 572 aa13.28□□□□□ -0.28
COL6A3-213ENST00000493475 TMCO2Q7Z6W1 182 aaPredicted RBP13.28□□□□□ -0.28
COL6A3-213ENST00000493475 SEPT1Q8WYJ6 367 aa13.28□□□□□ -0.28
COL6A3-213ENST00000493475 GLT8D2Q9H1C3 349 aa13.28□□□□□ -0.28
COL6A3-213ENST00000493475 IL25Q9H293 177 aa13.28□□□□□ -0.28
COL6A3-213ENST00000493475 SMARCAD1Q9H4L7 1026 aa13.28□□□□□ -0.28
COL6A3-213ENST00000493475 LY9Q9HBG7 655 aa13.28□□□□□ -0.28
COL6A3-213ENST00000493475 SETD4Q9NVD3 440 aa13.28□□□□□ -0.28
COL6A3-213ENST00000493475 PRRC2BQ5JSZ5 2229 aaKnown RBP13.27□□□□□ -0.28
COL6A3-213ENST00000493475 UPP2O95045 317 aa13.27□□□□□ -0.29
COL6A3-213ENST00000493475 TCF7P36402 384 aaPredicted RBP13.27□□□□□ -0.29
COL6A3-213ENST00000493475 HTRA4P83105 476 aaPredicted RBP13.27□□□□□ -0.29
COL6A3-213ENST00000493475 PPFIA1Q13136 1202 aa13.27□□□□□ -0.29
COL6A3-213ENST00000493475 MBTPS1Q14703 1052 aa13.27□□□□□ -0.29
COL6A3-213ENST00000493475 TRAF7Q6Q0C0 670 aa13.27□□□□□ -0.29
COL6A3-213ENST00000493475 USP17L6PQ6QN14 398 aa13.27□□□□□ -0.29
COL6A3-213ENST00000493475 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.27□□□□□ -0.29
COL6A3-213ENST00000493475 FAM43BQ6ZT52 329 aaPredicted RBP13.27□□□□□ -0.29
COL6A3-213ENST00000493475 TOP1MTQ969P6 601 aa13.27□□□□□ -0.29
COL6A3-213ENST00000493475 MRPL38Q96DV4 380 aaKnown RBP13.27□□□□□ -0.29
COL6A3-213ENST00000493475 IL17RAQ96F46 866 aa13.27□□□□□ -0.29
COL6A3-213ENST00000493475 ZFP91Q96JP5 570 aaPredicted RBP13.27□□□□□ -0.29
COL6A3-213ENST00000493475 SDF4Q9BRK5 362 aa13.27□□□□□ -0.29
COL6A3-213ENST00000493475 UBE2ZQ9H832 354 aaPredicted RBP13.27□□□□□ -0.29
COL6A3-213ENST00000493475 RBM28Q9NW13 759 aaKnown RBP13.27□□□□□ -0.29
COL6A3-213ENST00000493475 RRN3P2A6NIE6 340 aa13.26□□□□□ -0.29
COL6A3-213ENST00000493475 TTLL13PA6NNM8 815 aa13.26□□□□□ -0.29
COL6A3-213ENST00000493475 SH2B2O14492 632 aaPredicted RBP13.26□□□□□ -0.29
COL6A3-213ENST00000493475 LPXNO60711 386 aa13.26□□□□□ -0.29
COL6A3-213ENST00000493475 ARHGEF15O94989 841 aa13.26□□□□□ -0.29
COL6A3-213ENST00000493475 TRIP12Q14669 1992 aaPredicted RBP13.26□□□□□ -0.29
COL6A3-213ENST00000493475 FAM26DQ5JW98 314 aa13.26□□□□□ -0.29
COL6A3-213ENST00000493475 IER5Q5VY09 327 aa13.26□□□□□ -0.29
COL6A3-213ENST00000493475 KRT40Q6A162 431 aa13.26□□□□□ -0.29
COL6A3-213ENST00000493475 HEATR3Q7Z4Q2 680 aa13.26□□□□□ -0.29
COL6A3-213ENST00000493475 RPAINQ86UA6 219 aa13.26□□□□□ -0.29
COL6A3-213ENST00000493475 FIBCD1Q8N539 461 aa13.26□□□□□ -0.29
COL6A3-213ENST00000493475 LMBR1Q8WVP7 490 aa13.26□□□□□ -0.29
COL6A3-213ENST00000493475 GPKOWQ92917 476 aaPredicted RBP eCLIP13.26□□□□□ -0.29
COL6A3-213ENST00000493475 WNT8BQ93098 351 aa13.26□□□□□ -0.29
COL6A3-213ENST00000493475 PPP2R3CQ969Q6 453 aa13.26□□□□□ -0.29
COL6A3-213ENST00000493475 C11orf84Q9BUA3 381 aaPredicted RBP13.26□□□□□ -0.29
COL6A3-213ENST00000493475 MYL10Q9BUA6 226 aa13.26□□□□□ -0.29
COL6A3-213ENST00000493475 ANO2Q9NQ90 1003 aa13.26□□□□□ -0.29
COL6A3-213ENST00000493475 TCEAL9Q9UHQ7 104 aa13.26□□□□□ -0.29
COL6A3-213ENST00000493475 TUBE1Q9UJT0 475 aa13.26□□□□□ -0.29
COL6A3-213ENST00000493475 XIRP2A4UGR9 3374 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 hCG_1984214I3L0E3 225 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 MEIS2O14770 477 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 FOSP01100 380 aaPredicted RBP13.25□□□□□ -0.29
COL6A3-213ENST00000493475 RB1P06400 928 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 KCNA5P22460 613 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 ANTXR2P58335 489 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 GPM6BQ13491 265 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 LEXMQ3ZCV2 418 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 EPC2Q52LR7 807 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 TMEM31Q5JXX7 168 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 PPP1R18Q6NYC8 613 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 TRIM50Q86XT4 487 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 ZNF713Q8N859 430 aaPredicted RBP13.25□□□□□ -0.29
COL6A3-213ENST00000493475 FANCBQ8NB91 859 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 FAM122AQ96E09 287 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 NECAB3Q96P71 396 aaPredicted RBP13.25□□□□□ -0.29
COL6A3-213ENST00000493475 C17orf80Q9BSJ5 609 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 FTHL17Q9BXU8 183 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 LMAN2LQ9H0V9 348 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 SENP2Q9HC62 589 aa13.25□□□□□ -0.29
COL6A3-213ENST00000493475 JPH1Q9HDC5 661 aaPredicted RBP13.25□□□□□ -0.29
COL6A3-213ENST00000493475 TET1Q8NFU7 2136 aa13.24□□□□□ -0.29
COL6A3-213ENST00000493475 H3BNC9 293 aa13.24□□□□□ -0.29
COL6A3-213ENST00000493475 SSTR3P32745 418 aaPredicted RBP13.24□□□□□ -0.29
COL6A3-213ENST00000493475 SLC26A2P50443 739 aa13.24□□□□□ -0.29
COL6A3-213ENST00000493475 FGD1P98174 961 aa13.24□□□□□ -0.29
COL6A3-213ENST00000493475 KRT32Q14532 448 aa13.24□□□□□ -0.29
COL6A3-213ENST00000493475 GRIK4Q16099 956 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms