RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-215	ENST00000492606	WISP1	O95388	367 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	CYP2E1	P05181	493 aa	Predicted RBP	5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	POLR3D	P05423	398 aa	Predicted RBP	5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	MYL6B	P14649	208 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	PCSK2	P16519	638 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	FGD1	P98174	961 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	TNP2	Q05952	138 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	PSMD2	Q13200	908 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	DBN1	Q16643	649 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	PROSER3	Q2NL68	480 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	5.22	□□□□□ -1.57	2e-11	■■□□□ 11.5
UBR4-215	ENST00000492606	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	ZNF438	Q7Z4V0	828 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	DEFB128	Q7Z7B8	93 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	RNF180	Q86T96	592 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	GALNT12	Q8IXK2	581 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	MAML2	Q8IZL2	1156 aa	Predicted RBP	5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	TMEM87A	Q8NBN3	555 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	SMRP1	Q8NCR6	262 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	GPRC5A	Q8NFJ5	357 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	LENG1	Q96BZ8	264 aa	Predicted RBP	5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	CEP63	Q96MT8	703 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	RTP3	Q9BQQ7	232 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	ZFAT	Q9P243	1243 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	CTNNA3	Q9UI47	895 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	SORCS3	Q9UPU3	1222 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	KIAA1217	Q5T5P2	1943 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	F8	P00451	2351 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	MTOR	P42345	2549 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	MROH7	Q68CQ1	1323 aa		5.22	□□□□□ -1.57
UBR4-215	ENST00000492606	CENPE	Q02224	2701 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	CSMD1	Q96PZ7	3565 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	PHF20L1	A8MW92	1017 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	ARVCF	O00192	962 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	LCE2B	O14633	110 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	NCK2	O43639	380 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	ADAMTS4	O75173	837 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	FAM157B	P0CG42	384 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	GP1BB	P13224	206 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	PTS	Q03393	145 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	ADAM15	Q13444	863 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	PTPRO	Q16827	1216 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	PEAR1	Q5VY43	1037 aa	Predicted RBP	5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	IL31	Q6EBC2	164 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	CCSAP	Q6IQ19	270 aa	Predicted RBP	5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	SNX29	Q8TEQ0	813 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	SECISBP2L	Q93073	1101 aa	Known RBP	5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	UBL7	Q96S82	380 aa	Predicted RBP	5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	IGFLR1	Q9H665	355 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	CD209	Q9NNX6	404 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	FNDC3A	Q9Y2H6	1198 aa	Known RBP	5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	PAXBP1	Q9Y5B6	917 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	CACNA1D	Q01668	2161 aa		5.21	□□□□□ -1.58
UBR4-215	ENST00000492606	MYADML2	A6NDP7	307 aa		5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	GIPC1	O14908	333 aa		5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	ATXN7	O15265	892 aa	Predicted RBP	5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	BNIP3L	O60238	219 aa		5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	SASH3	O75995	380 aa		5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	SP100	P23497	879 aa	Predicted RBP	5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	TARS	P26639	723 aa	Known RBP	5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	CCT4	P50991	539 aa	Known RBP	5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	ERVK-24	P63145	666 aa		5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	LBR	Q14739	615 aa	Known RBP	5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	PRR23C	Q6ZRP0	262 aa		5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	SCYL3	Q8IZE3	742 aa		5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	NUP133	Q8WUM0	1156 aa		5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	FAM89A	Q96GI7	184 aa		5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	FRMD6	Q96NE9	622 aa		5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	C12orf49	Q9H741	205 aa		5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	NPHS2	Q9NP85	383 aa		5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	METTL5	Q9NRN9	209 aa	Known RBP	5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	SALL4	Q9UJQ4	1053 aa		5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	KIF16B	Q96L93	1317 aa		5.2	□□□□□ -1.58
UBR4-215	ENST00000492606	FBN1	P35555	2871 aa	Known RBP	5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	SPEF2	Q9C093	1822 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	SLC15A5	A6NIM6	579 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606		H3BNC9	293 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	TLR3	O15455	904 aa	Known RBP	5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	MMP20	O60882	483 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	PHACTR2	O75167	634 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	NEFL	P07196	543 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	ASGR2	P07307	311 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	SLURP2	P0DP57	97 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	MAPT	P10636	758 aa	Known RBP	5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	RACK1	P63244	317 aa	Known RBP	5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	DEFB103A	P81534	67 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	MAP3K10	Q02779	954 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	COASY	Q13057	564 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	GPM6B	Q13491	265 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	KCNA10	Q16322	511 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	PKDCC	Q504Y2	493 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	PSAPL1	Q6NUJ1	521 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	NXPE4	Q6UWF7	544 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	FAM83A	Q86UY5	434 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	NT5DC4	Q86YG4	428 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	KLHDC9	Q8NEP7	349 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	HOOK2	Q96ED9	719 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	SLC30A3	Q99726	388 aa		5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	THUMPD2	Q9BTF0	503 aa	Known RBP	5.19	□□□□□ -1.58
UBR4-215	ENST00000492606	EPC1	Q9H2F5	836 aa		5.19	□□□□□ -1.58

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