RNA–Protein interactions for RNA: ENST00000492275.5

TTC3-223, Transcript of tetratricopeptide repeat domain 3, human

TSL 3

Gene TTC3, Length 769 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-223	ENST00000492275	ITGB8	P26012	769 aa		29.27	■■■□□ 2.28
TTC3-223	ENST00000492275	ACTR2	P61160	394 aa		29.27	■■■□□ 2.28
TTC3-223	ENST00000492275	CUL4A	Q13619	759 aa		29.27	■■■□□ 2.28
TTC3-223	ENST00000492275	SESTD1	Q86VW0	696 aa		29.27	■■■□□ 2.28
TTC3-223	ENST00000492275	TUT1	Q9H6E5	874 aa	Known RBP	29.27	■■■□□ 2.28
TTC3-223	ENST00000492275	TRMT13	Q9NUP7	481 aa	Known RBP	29.27	■■■□□ 2.28
TTC3-223	ENST00000492275	PRKAG2	Q9UGJ0	569 aa		29.27	■■■□□ 2.28
TTC3-223	ENST00000492275	WDR81	Q562E7	1941 aa		29.26	■■■□□ 2.27
TTC3-223	ENST00000492275	DDX39A	O00148	427 aa	Known RBP	29.26	■■■□□ 2.27
TTC3-223	ENST00000492275	TBC1D22B	Q9NU19	505 aa		29.26	■■■□□ 2.27
TTC3-223	ENST00000492275	HDAC6	Q9UBN7	1215 aa		29.26	■■■□□ 2.27
TTC3-223	ENST00000492275	KAT6A	Q92794	2004 aa		29.25	■■■□□ 2.27
TTC3-223	ENST00000492275	ATG7	O95352	703 aa		29.25	■■■□□ 2.27
TTC3-223	ENST00000492275	GJB2	P29033	226 aa		29.25	■■■□□ 2.27
TTC3-223	ENST00000492275	SAFB	Q15424	915 aa	Known RBP eCLIP	29.25	■■■□□ 2.27
TTC3-223	ENST00000492275	PPP4R3A	Q6IN85	833 aa		29.25	■■■□□ 2.27
TTC3-223	ENST00000492275	SLC5A5	Q92911	643 aa		29.25	■■■□□ 2.27
TTC3-223	ENST00000492275	GJA10	Q969M2	543 aa		29.25	■■■□□ 2.27
TTC3-223	ENST00000492275	PCYT2	Q99447	389 aa		29.25	■■■□□ 2.27
TTC3-223	ENST00000492275	DDX25	Q9UHL0	483 aa	Known RBP	29.25	■■■□□ 2.27
TTC3-223	ENST00000492275	SLC37A4	O43826	429 aa		29.24	■■■□□ 2.27
TTC3-223	ENST00000492275	LGR5	O75473	907 aa		29.24	■■■□□ 2.27
TTC3-223	ENST00000492275	MAGEA10	P43363	369 aa	Predicted RBP	29.24	■■■□□ 2.27
TTC3-223	ENST00000492275	GDF6	Q6KF10	455 aa	Predicted RBP	29.24	■■■□□ 2.27
TTC3-223	ENST00000492275	C7orf31	Q8N865	590 aa		29.24	■■■□□ 2.27
TTC3-223	ENST00000492275	GDF15	Q99988	308 aa		29.24	■■■□□ 2.27
TTC3-223	ENST00000492275	GTF2IRD1	Q9UHL9	959 aa		29.24	■■■□□ 2.27
TTC3-223	ENST00000492275	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	29.24	■■■□□ 2.27
TTC3-223	ENST00000492275	MDM2	Q00987	491 aa	Predicted RBP	29.23	■■■□□ 2.27
TTC3-223	ENST00000492275	HIC1	Q14526	733 aa		29.23	■■■□□ 2.27
TTC3-223	ENST00000492275	ETNPPL	Q8TBG4	499 aa		29.23	■■■□□ 2.27
TTC3-223	ENST00000492275	CTAGE1	Q96RT6	745 aa		29.23	■■■□□ 2.27
TTC3-223	ENST00000492275	FOXP1	Q9H334	677 aa	Predicted RBP	29.23	■■■□□ 2.27
TTC3-223	ENST00000492275	SMC3	Q9UQE7	1217 aa		29.23	■■■□□ 2.27
TTC3-223	ENST00000492275	CCNT1	O60563	726 aa	Known RBP	29.22	■■■□□ 2.27
TTC3-223	ENST00000492275	SUPT20HL2	P0C7V6	817 aa		29.22	■■■□□ 2.27
TTC3-223	ENST00000492275	GCFC2	P16383	781 aa	Known RBP	29.22	■■■□□ 2.27
TTC3-223	ENST00000492275	ABHD15	Q6UXT9	468 aa		29.22	■■■□□ 2.27
TTC3-223	ENST00000492275	BAD	Q92934	168 aa		29.22	■■■□□ 2.27
TTC3-223	ENST00000492275	RIT2	Q99578	217 aa		29.22	■■■□□ 2.27
TTC3-223	ENST00000492275	PRO3102	Q9H379	93 aa		29.22	■■■□□ 2.27
TTC3-223	ENST00000492275	RNPEP	Q9H4A4	650 aa		29.22	■■■□□ 2.27
TTC3-223	ENST00000492275	EMSY	Q7Z589	1322 aa		29.21	■■■□□ 2.27
TTC3-223	ENST00000492275	MYH9	P35579	1960 aa	Known RBP	29.21	■■■□□ 2.27
TTC3-223	ENST00000492275	IGKV6D-21	A0A0A0MT36	114 aa		29.21	■■■□□ 2.27
TTC3-223	ENST00000492275	WNT7A	O00755	349 aa		29.21	■■■□□ 2.27
TTC3-223	ENST00000492275	CYP2C9	P11712	490 aa		29.21	■■■□□ 2.27
TTC3-223	ENST00000492275	RAG1	P15918	1043 aa		29.21	■■■□□ 2.27
TTC3-223	ENST00000492275	ZNF746	Q6NUN9	644 aa	Predicted RBP	29.21	■■■□□ 2.27
TTC3-223	ENST00000492275	CHRDL2	Q6WN34	429 aa		29.21	■■■□□ 2.27
TTC3-223	ENST00000492275	SNX21	Q969T3	373 aa		29.21	■■■□□ 2.27
TTC3-223	ENST00000492275	NAP1L4	Q99733	375 aa	Known RBP	29.21	■■■□□ 2.27
TTC3-223	ENST00000492275	SMARCAD1	Q9H4L7	1026 aa		29.21	■■■□□ 2.27
TTC3-223	ENST00000492275	ZNF215	Q9UL58	517 aa	Predicted RBP	29.21	■■■□□ 2.27
TTC3-223	ENST00000492275	KIF3A	Q9Y496	699 aa		29.21	■■■□□ 2.27
TTC3-223	ENST00000492275	PSMD10	O75832	226 aa		29.2	■■■□□ 2.26
TTC3-223	ENST00000492275	TIMP1	P01033	207 aa		29.2	■■■□□ 2.26
TTC3-223	ENST00000492275	SMIM10L2A	P0DMW4	78 aa		29.2	■■■□□ 2.26
TTC3-223	ENST00000492275	SMIM10L2B	P0DMW5	78 aa		29.2	■■■□□ 2.26
TTC3-223	ENST00000492275	ZNF200	P98182	395 aa	Predicted RBP	29.2	■■■□□ 2.26
TTC3-223	ENST00000492275	PTGIS	Q16647	500 aa		29.2	■■■□□ 2.26
TTC3-223	ENST00000492275	GLG1	Q92896	1179 aa		29.2	■■■□□ 2.26
TTC3-223	ENST00000492275	COLQ	Q9Y215	455 aa	Predicted RBP	29.2	■■■□□ 2.26
TTC3-223	ENST00000492275	KIF28P	B7ZC32	967 aa		29.19	■■■□□ 2.26
TTC3-223	ENST00000492275		K7ELQ4	463 aa	Predicted RBP	29.19	■■■□□ 2.26
TTC3-223	ENST00000492275	HOXC8	P31273	242 aa		29.19	■■■□□ 2.26
TTC3-223	ENST00000492275	KRT76	Q01546	638 aa		29.19	■■■□□ 2.26
TTC3-223	ENST00000492275	LRCH2	Q5VUJ6	765 aa		29.19	■■■□□ 2.26
TTC3-223	ENST00000492275	LBHD1	Q9BQE6	289 aa	Predicted RBP	29.19	■■■□□ 2.26
TTC3-223	ENST00000492275	NOC4L	Q9BVI4	516 aa	Known RBP	29.19	■■■□□ 2.26
TTC3-223	ENST00000492275	PPP1R12C	Q9BZL4	782 aa		29.19	■■■□□ 2.26
TTC3-223	ENST00000492275	KCNMB3	Q9NPA1	279 aa		29.19	■■■□□ 2.26
TTC3-223	ENST00000492275	ERAP1	Q9NZ08	941 aa		29.19	■■■□□ 2.26
TTC3-223	ENST00000492275	GAS7	O60861	476 aa		29.18	■■■□□ 2.26
TTC3-223	ENST00000492275	MARK3	P27448	753 aa		29.18	■■■□□ 2.26
TTC3-223	ENST00000492275	STAT5B	P51692	787 aa		29.18	■■■□□ 2.26
TTC3-223	ENST00000492275	PLPPR4	Q7Z2D5	763 aa		29.18	■■■□□ 2.26
TTC3-223	ENST00000492275	HAS1	Q92839	578 aa		29.18	■■■□□ 2.26
TTC3-223	ENST00000492275	TEKT3	Q9BXF9	490 aa		29.18	■■■□□ 2.26
TTC3-223	ENST00000492275	HIPK3	Q9H422	1215 aa		29.18	■■■□□ 2.26
TTC3-223	ENST00000492275	UMODL1	Q5DID0	1318 aa		29.18	■■■□□ 2.26
TTC3-223	ENST00000492275	U2AF2	P26368	475 aa	Known RBP eCLIP	29.17	■■■□□ 2.26	7e-8	■■■□□ 15.2
TTC3-223	ENST00000492275	CYP2C18	P33260	490 aa		29.17	■■■□□ 2.26
TTC3-223	ENST00000492275	MIS18BP1	Q6P0N0	1132 aa		29.17	■■■□□ 2.26
TTC3-223	ENST00000492275	B3GNT9	Q6UX72	402 aa		29.17	■■■□□ 2.26
TTC3-223	ENST00000492275	POTED	Q86YR6	584 aa		29.17	■■■□□ 2.26
TTC3-223	ENST00000492275	SMAP1	Q8IYB5	467 aa	Predicted RBP	29.17	■■■□□ 2.26
TTC3-223	ENST00000492275	UNC45A	Q9H3U1	944 aa		29.17	■■■□□ 2.26
TTC3-223	ENST00000492275	AZI2	Q9H6S1	392 aa		29.17	■■■□□ 2.26
TTC3-223	ENST00000492275	BMP8B	P34820	402 aa		29.16	■■■□□ 2.26
TTC3-223	ENST00000492275	SWSAP1	Q6NVH7	229 aa		29.16	■■■□□ 2.26
TTC3-223	ENST00000492275	NOSTRIN	Q8IVI9	506 aa		29.16	■■■□□ 2.26
TTC3-223	ENST00000492275	CCDC60	Q8IWA6	550 aa	Predicted RBP	29.16	■■■□□ 2.26
TTC3-223	ENST00000492275	FAM20A	Q96MK3	541 aa		29.16	■■■□□ 2.26
TTC3-223	ENST00000492275	SETD4	Q9NVD3	440 aa		29.16	■■■□□ 2.26
TTC3-223	ENST00000492275	NOD1	Q9Y239	953 aa		29.16	■■■□□ 2.26
TTC3-223	ENST00000492275	PCDHA10	Q9Y5I2	948 aa		29.16	■■■□□ 2.26
TTC3-223	ENST00000492275	C17orf102	A2RUQ5	167 aa		29.15	■■■□□ 2.26
TTC3-223	ENST00000492275	MFSD5	Q6N075	450 aa		29.15	■■■□□ 2.26
TTC3-223	ENST00000492275	AFAP1L1	Q8TED9	768 aa		29.15	■■■□□ 2.26

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms