RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 TELO2Q9Y4R8 837 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 MBTPS2O43462 519 aa16.16■□□□□ 0.18
VARS-227ENST00000489979 CSPG5O95196 566 aa16.16■□□□□ 0.18
VARS-227ENST00000489979 CHRNA1P02708 482 aa16.16■□□□□ 0.18
VARS-227ENST00000489979 ICAM3P32942 547 aa16.16■□□□□ 0.18
VARS-227ENST00000489979 RRP1P56182 461 aaKnown RBP16.16■□□□□ 0.18
VARS-227ENST00000489979 ADAM17P78536 824 aa16.16■□□□□ 0.18
VARS-227ENST00000489979 SEMA3FQ13275 785 aa16.16■□□□□ 0.18
VARS-227ENST00000489979 UTP14CQ5TAP6 766 aaKnown RBP16.16■□□□□ 0.18
VARS-227ENST00000489979 CYB5R4Q7L1T6 521 aa16.16■□□□□ 0.18
VARS-227ENST00000489979 LMBR1Q8WVP7 490 aa16.16■□□□□ 0.18
VARS-227ENST00000489979 INPP4AQ96PE3 977 aaPredicted RBP16.16■□□□□ 0.18
VARS-227ENST00000489979 IGFLR1Q9H665 355 aa16.16■□□□□ 0.18
VARS-227ENST00000489979 MUTYHQ9UIF7 546 aa16.16■□□□□ 0.18
VARS-227ENST00000489979 ZNF215Q9UL58 517 aaPredicted RBP16.16■□□□□ 0.18
VARS-227ENST00000489979 RWDD3Q9Y3V2 267 aa16.16■□□□□ 0.18
VARS-227ENST00000489979 SUPT16HQ9Y5B9 1047 aaKnown RBP16.16■□□□□ 0.18
VARS-227ENST00000489979 SPATA31C2B4DYI2 1134 aa16.15■□□□□ 0.18
VARS-227ENST00000489979 TECTAO75443 2155 aa16.15■□□□□ 0.18
VARS-227ENST00000489979 GHRP10912 638 aa16.15■□□□□ 0.18
VARS-227ENST00000489979 GTF2F1P35269 517 aaKnown RBP eCLIP16.15■□□□□ 0.18
VARS-227ENST00000489979 SP4Q02446 784 aa16.15■□□□□ 0.18
VARS-227ENST00000489979 TRAF1Q13077 416 aa16.15■□□□□ 0.18
VARS-227ENST00000489979 B4GALNT3Q6L9W6 998 aa16.15■□□□□ 0.18
VARS-227ENST00000489979 PLEKHM2Q8IWE5 1019 aa16.15■□□□□ 0.18
VARS-227ENST00000489979 RIOX1Q9H6W3 641 aa16.15■□□□□ 0.18
VARS-227ENST00000489979 RC3H2Q9HBD1 1191 aaKnown RBP16.15■□□□□ 0.18
VARS-227ENST00000489979 FRMPD4Q14CM0 1322 aa16.15■□□□□ 0.18
VARS-227ENST00000489979 ADGRA3Q8IWK6 1321 aa16.15■□□□□ 0.18
VARS-227ENST00000489979 TTC3P53804 2025 aa16.14■□□□□ 0.17
VARS-227ENST00000489979 FIBPO43427 364 aa16.14■□□□□ 0.17
VARS-227ENST00000489979 TBX10O75333 385 aa16.14■□□□□ 0.17
VARS-227ENST00000489979 STAM2O75886 525 aa16.14■□□□□ 0.17
VARS-227ENST00000489979 SMAD4Q13485 552 aaKnown RBP16.14■□□□□ 0.17
VARS-227ENST00000489979 GRM4Q14833 912 aa16.14■□□□□ 0.17
VARS-227ENST00000489979 HERC4Q5GLZ8 1057 aaPredicted RBP16.14■□□□□ 0.17
VARS-227ENST00000489979 RUFY4Q6ZNE9 571 aa16.14■□□□□ 0.17
VARS-227ENST00000489979 RNF135Q8IUD6 432 aa16.14■□□□□ 0.17
VARS-227ENST00000489979 CLP1Q92989 425 aaKnown RBP16.14■□□□□ 0.17
VARS-227ENST00000489979 MFSD14AQ96MC6 490 aa16.14■□□□□ 0.17
VARS-227ENST00000489979 POP1Q99575 1024 aaKnown RBP16.14■□□□□ 0.17
VARS-227ENST00000489979 EHMT1Q9H9B1 1298 aa16.14■□□□□ 0.17
VARS-227ENST00000489979 PNMA6FA0A0J9YX94 578 aa16.13■□□□□ 0.17
VARS-227ENST00000489979 HIP1O00291 1037 aa16.13■□□□□ 0.17
VARS-227ENST00000489979 ENPP3O14638 875 aa16.13■□□□□ 0.17
VARS-227ENST00000489979 LINC01565O15544 149 aa16.13■□□□□ 0.17
VARS-227ENST00000489979 CYTH3O43739 400 aa16.13■□□□□ 0.17
VARS-227ENST00000489979 MGAT3Q09327 533 aa16.13■□□□□ 0.17
VARS-227ENST00000489979 BTG3Q14201 252 aaPredicted RBP16.13■□□□□ 0.17
VARS-227ENST00000489979 LPIN1Q14693 890 aa16.13■□□□□ 0.17
VARS-227ENST00000489979 OSBPL3Q9H4L5 887 aa16.13■□□□□ 0.17
VARS-227ENST00000489979 CD207Q9UJ71 328 aa16.13■□□□□ 0.17
VARS-227ENST00000489979 NRCAMQ92823 1304 aa16.13■□□□□ 0.17
VARS-227ENST00000489979 STXBP3O00186 592 aa16.12■□□□□ 0.17
VARS-227ENST00000489979 MMP1P03956 469 aa16.12■□□□□ 0.17
VARS-227ENST00000489979 TAF2Q6P1X5 1199 aa16.12■□□□□ 0.17
VARS-227ENST00000489979 PIBF1Q8WXW3 757 aa16.12■□□□□ 0.17
VARS-227ENST00000489979 ZNF689Q96CS4 500 aaPredicted RBP16.12■□□□□ 0.17
VARS-227ENST00000489979 SENP7Q9BQF6 1050 aa16.12■□□□□ 0.17
VARS-227ENST00000489979 PLVAPQ9BX97 442 aa16.12■□□□□ 0.17
VARS-227ENST00000489979 SENP2Q9HC62 589 aa16.12■□□□□ 0.17
VARS-227ENST00000489979 ALG13Q9NP73 1137 aaKnown RBP16.12■□□□□ 0.17
VARS-227ENST00000489979 KIAA1671Q9BY89 1806 aa16.11■□□□□ 0.17
VARS-227ENST00000489979 NDUFV1P49821 464 aa16.11■□□□□ 0.17
VARS-227ENST00000489979 ADAM15Q13444 863 aa16.11■□□□□ 0.17
VARS-227ENST00000489979 CAMK1Q14012 370 aa16.11■□□□□ 0.17
VARS-227ENST00000489979 FBXO47Q5MNV8 452 aa16.11■□□□□ 0.17
VARS-227ENST00000489979 RSPH3Q86UC2 560 aa16.11■□□□□ 0.17
VARS-227ENST00000489979 CHD1LQ86WJ1 897 aa16.11■□□□□ 0.17
VARS-227ENST00000489979 SMC5Q8IY18 1101 aa16.11■□□□□ 0.17
VARS-227ENST00000489979 IL25Q9H293 177 aa16.11■□□□□ 0.17
VARS-227ENST00000489979 PLAGL2Q9UPG8 496 aa16.11■□□□□ 0.17
VARS-227ENST00000489979 IFIT3O14879 490 aaKnown RBP16.1■□□□□ 0.17
VARS-227ENST00000489979 DGKIO75912 1065 aa16.1■□□□□ 0.17
VARS-227ENST00000489979 TCF7P36402 384 aaPredicted RBP16.1■□□□□ 0.17
VARS-227ENST00000489979 TRDNQ13061 729 aa16.1■□□□□ 0.17
VARS-227ENST00000489979 PPFIA1Q13136 1202 aa16.1■□□□□ 0.17
VARS-227ENST00000489979 PCNX4Q63HM2 1172 aa16.1■□□□□ 0.17
VARS-227ENST00000489979 DNAJB3Q8WWF6 145 aa16.1■□□□□ 0.17
VARS-227ENST00000489979 LINC01599Q8WXQ3 324 aa16.1■□□□□ 0.17
VARS-227ENST00000489979 EDAQ92838 391 aa16.1■□□□□ 0.17
VARS-227ENST00000489979 PHOX2BQ99453 314 aa16.1■□□□□ 0.17
VARS-227ENST00000489979 CDY2AQ9Y6F7 541 aa16.1■□□□□ 0.17
VARS-227ENST00000489979 MRPL42Q9Y6G3 142 aaKnown RBP16.1■□□□□ 0.17
VARS-227ENST00000489979 DNAJB1P25685 340 aa16.09■□□□□ 0.17
VARS-227ENST00000489979 MARK3P27448 753 aa16.09■□□□□ 0.17
VARS-227ENST00000489979 TROAPQ12815 778 aa16.09■□□□□ 0.17
VARS-227ENST00000489979 GRIK4Q16099 956 aa16.09■□□□□ 0.17
VARS-227ENST00000489979 USP17L6PQ6QN14 398 aa16.09■□□□□ 0.17
VARS-227ENST00000489979 TSHZ1Q6ZSZ6 1077 aa16.09■□□□□ 0.17
VARS-227ENST00000489979 NLRX1Q86UT6 975 aa16.09■□□□□ 0.17
VARS-227ENST00000489979 PRSS33Q8NF86 280 aa16.09■□□□□ 0.17
VARS-227ENST00000489979 SMARCC2Q8TAQ2 1214 aa16.09■□□□□ 0.17
VARS-227ENST00000489979 P2RX5Q93086 422 aa16.09■□□□□ 0.17
VARS-227ENST00000489979 MSLNLQ96KJ4 702 aa16.09■□□□□ 0.17
VARS-227ENST00000489979 TUBE1Q9UJT0 475 aa16.09■□□□□ 0.17
VARS-227ENST00000489979 LOXHD1Q8IVV2 1947 aa16.08■□□□□ 0.16
VARS-227ENST00000489979 ERICH2A1L162 156 aa16.08■□□□□ 0.16
VARS-227ENST00000489979 MBLAC1A4D2B0 266 aaPredicted RBP16.08■□□□□ 0.16
VARS-227ENST00000489979 ATP9AO75110 1047 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms