RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 PCDHA4Q9UN74 947 aa15.85■□□□□ 0.13
SYNE1-226ENST00000488376 GRXCR1A8MXD5 290 aa15.84■□□□□ 0.13
SYNE1-226ENST00000488376 MAFGO15525 162 aa15.84■□□□□ 0.13
SYNE1-226ENST00000488376 DHX15O43143 795 aaKnown RBP15.84■□□□□ 0.13
SYNE1-226ENST00000488376 JAK2O60674 1132 aa15.84■□□□□ 0.13
SYNE1-226ENST00000488376 IQCF3P0C7M6 154 aa15.84■□□□□ 0.13
SYNE1-226ENST00000488376 MARK3P27448 753 aa15.84■□□□□ 0.13
SYNE1-226ENST00000488376 TCTN1Q2MV58 587 aa15.84■□□□□ 0.13
SYNE1-226ENST00000488376 RASIP1Q5U651 963 aa15.84■□□□□ 0.13
SYNE1-226ENST00000488376 CPLX2Q6PUV4 134 aaKnown RBP15.84■□□□□ 0.13
SYNE1-226ENST00000488376 TRAF7Q6Q0C0 670 aa15.84■□□□□ 0.13
SYNE1-226ENST00000488376 OTOP2Q7RTS6 562 aa15.84■□□□□ 0.13
SYNE1-226ENST00000488376 OXER1Q8TDS5 423 aa15.84■□□□□ 0.13
SYNE1-226ENST00000488376 SEPT1Q8WYJ6 367 aa15.84■□□□□ 0.13
SYNE1-226ENST00000488376 ZBTB10Q96DT7 871 aa15.84■□□□□ 0.13
SYNE1-226ENST00000488376 SLC9A2Q9UBY0 812 aa15.84■□□□□ 0.13
SYNE1-226ENST00000488376 STK36Q9NRP7 1315 aa15.84■□□□□ 0.13
SYNE1-226ENST00000488376 C17orf102A2RUQ5 167 aa15.83■□□□□ 0.12
SYNE1-226ENST00000488376 PITPNM1O00562 1244 aa15.83■□□□□ 0.12
SYNE1-226ENST00000488376 TREHO43280 583 aa15.83■□□□□ 0.12
SYNE1-226ENST00000488376 CKBP12277 381 aa15.83■□□□□ 0.12
SYNE1-226ENST00000488376 FOSBP53539 338 aa15.83■□□□□ 0.12
SYNE1-226ENST00000488376 ACTR2P61160 394 aa15.83■□□□□ 0.12
SYNE1-226ENST00000488376 PRR16Q569H4 304 aa15.83■□□□□ 0.12
SYNE1-226ENST00000488376 NIPA1Q7RTP0 329 aa15.83■□□□□ 0.12
SYNE1-226ENST00000488376 BLIDQ8IZY5 108 aa15.83■□□□□ 0.12
SYNE1-226ENST00000488376 DAGLBQ8NCG7 672 aa15.83■□□□□ 0.12
SYNE1-226ENST00000488376 NSUN7Q8NE18 718 aaKnown RBP15.83■□□□□ 0.12
SYNE1-226ENST00000488376 BICD2Q8TD16 824 aa15.83■□□□□ 0.12
SYNE1-226ENST00000488376 LMBR1Q8WVP7 490 aa15.83■□□□□ 0.12
SYNE1-226ENST00000488376 GJA10Q969M2 543 aa15.83■□□□□ 0.12
SYNE1-226ENST00000488376 PHF20Q9BVI0 1012 aa15.83■□□□□ 0.12
SYNE1-226ENST00000488376 C22orf23Q9BZE7 217 aa15.83■□□□□ 0.12
SYNE1-226ENST00000488376 OSBPL7Q9BZF2 842 aa15.83■□□□□ 0.12
SYNE1-226ENST00000488376 ORC3Q9UBD5 711 aaPredicted RBP15.83■□□□□ 0.12
SYNE1-226ENST00000488376 NFASCO94856 1347 aa15.83■□□□□ 0.12
SYNE1-226ENST00000488376 CDKL5O76039 1030 aa15.82■□□□□ 0.12
SYNE1-226ENST00000488376 CIITAP33076 1130 aa15.82■□□□□ 0.12
SYNE1-226ENST00000488376 PTK7Q13308 1070 aa15.82■□□□□ 0.12
SYNE1-226ENST00000488376 BFSP2Q13515 415 aa15.82■□□□□ 0.12
SYNE1-226ENST00000488376 MBTPS1Q14703 1052 aa15.82■□□□□ 0.12
SYNE1-226ENST00000488376 EARS2Q5JPH6 523 aaKnown RBP15.82■□□□□ 0.12
SYNE1-226ENST00000488376 ZNF618Q5T7W0 954 aa15.82■□□□□ 0.12
SYNE1-226ENST00000488376 PSRC1Q6PGN9 363 aaPredicted RBP15.82■□□□□ 0.12
SYNE1-226ENST00000488376 SERINC5Q86VE9 423 aa15.82■□□□□ 0.12
SYNE1-226ENST00000488376 TBCKQ8TEA7 893 aa15.82■□□□□ 0.12
SYNE1-226ENST00000488376 HERVK_113Q902F9 699 aa15.82■□□□□ 0.12
SYNE1-226ENST00000488376 ATP6V0A1Q93050 837 aa15.82■□□□□ 0.12
SYNE1-226ENST00000488376 SDF4Q9BRK5 362 aa15.82■□□□□ 0.12
SYNE1-226ENST00000488376 FAM205CA6NFA0 338 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 IPO5O00410 1097 aaKnown RBP15.81■□□□□ 0.12
SYNE1-226ENST00000488376 EIF5BO60841 1220 aaKnown RBP15.81■□□□□ 0.12
SYNE1-226ENST00000488376 NBNO60934 754 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 LGR5O75473 907 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 TDP2O95551 362 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 FGBP02675 491 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 SELPP16109 830 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 PBX2P40425 430 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 RBM25P49756 843 aaKnown RBP15.81■□□□□ 0.12
SYNE1-226ENST00000488376 ADAM17P78536 824 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 RBL2Q08999 1139 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 SCN5AQ14524 2016 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 MCTP2Q6DN12 878 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 RUFY4Q6ZNE9 571 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 LRRC8DQ7L1W4 858 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 DEFB123Q8N688 67 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 RETREG2Q8NC44 543 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 CAGE1Q8TC20 777 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 GLG1Q92896 1179 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 FAM161BQ96MY7 647 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 ZNF577Q9BSK1 485 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 TANC1Q9C0D5 1861 aa15.81■□□□□ 0.12
SYNE1-226ENST00000488376 ZNF215Q9UL58 517 aaPredicted RBP15.81■□□□□ 0.12
SYNE1-226ENST00000488376 EMSYQ7Z589 1322 aa15.8■□□□□ 0.12
SYNE1-226ENST00000488376 MSH4O15457 936 aa15.8■□□□□ 0.12
SYNE1-226ENST00000488376 ATG7O95352 703 aa15.8■□□□□ 0.12
SYNE1-226ENST00000488376 INF2Q27J81 1249 aa15.8■□□□□ 0.12
SYNE1-226ENST00000488376 MARCH8Q5T0T0 291 aa15.8■□□□□ 0.12
SYNE1-226ENST00000488376 CCDC83Q8IWF9 413 aa15.8■□□□□ 0.12
SYNE1-226ENST00000488376 AFAP1L1Q8TED9 768 aa15.8■□□□□ 0.12
SYNE1-226ENST00000488376 TRAPPC12Q8WVT3 735 aa15.8■□□□□ 0.12
SYNE1-226ENST00000488376 THPOP40225 353 aa15.79■□□□□ 0.12
SYNE1-226ENST00000488376 SMAD3P84022 425 aaKnown RBP15.79■□□□□ 0.12
SYNE1-226ENST00000488376 PPFIA1Q13136 1202 aa15.79■□□□□ 0.12
SYNE1-226ENST00000488376 GRIK4Q16099 956 aa15.79■□□□□ 0.12
SYNE1-226ENST00000488376 ABHD15Q6UXT9 468 aa15.79■□□□□ 0.12
SYNE1-226ENST00000488376 CCDC60Q8IWA6 550 aaPredicted RBP15.79■□□□□ 0.12
SYNE1-226ENST00000488376 CCDC155Q8N6L0 562 aa15.79■□□□□ 0.12
SYNE1-226ENST00000488376 TTYH1Q9H313 450 aaPredicted RBP15.79■□□□□ 0.12
SYNE1-226ENST00000488376 SMARCAD1Q9H4L7 1026 aa15.79■□□□□ 0.12
SYNE1-226ENST00000488376 ERAP1Q9NZ08 941 aa15.79■□□□□ 0.12
SYNE1-226ENST00000488376 LIMCH1Q9UPQ0 1083 aa15.79■□□□□ 0.12
SYNE1-226ENST00000488376 IGKV6D-21A0A0A0MT36 114 aa15.78■□□□□ 0.12
SYNE1-226ENST00000488376 ZBBXA8MT70 800 aa15.78■□□□□ 0.12
SYNE1-226ENST00000488376 SLC37A4O43826 429 aa15.78■□□□□ 0.12
SYNE1-226ENST00000488376 CD2BP2O95400 341 aaKnown RBP15.78■□□□□ 0.12
SYNE1-226ENST00000488376 CTSHP09668 335 aa15.78■□□□□ 0.12
SYNE1-226ENST00000488376 USP11P51784 963 aa15.78■□□□□ 0.12
SYNE1-226ENST00000488376 IGBP1P78318 339 aa15.78■□□□□ 0.12
SYNE1-226ENST00000488376 SETQ01105 290 aaPredicted RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms