RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.02□□□□□ -0.48
HDAC6-228ENST00000486227 ZHX2Q9Y6X8 837 aa12.02□□□□□ -0.48
HDAC6-228ENST00000486227 E9PMD0 336 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 GYS2P54840 703 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 EZH2Q15910 746 aaKnown RBP12.02□□□□□ -0.49
HDAC6-228ENST00000486227 C3orf67Q6ZVT6 689 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 USP49Q70CQ1 688 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 EEPD1Q7L9B9 569 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 RSPH3Q86UC2 560 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 METTL16Q86W50 562 aaKnown RBP12.02□□□□□ -0.49
HDAC6-228ENST00000486227 SLC4A9Q96Q91 983 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 SPZ1Q9BXG8 430 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 NDST4Q9H3R1 872 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 PARVGQ9HBI0 331 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 AMFRQ9UKV5 643 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 KCNK3O14649 394 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 PSMC2P35998 433 aaKnown RBP12.02□□□□□ -0.49
HDAC6-228ENST00000486227 CDC42EP5Q6NZY7 148 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 JPH2Q9BR39 696 aaPredicted RBP12.02□□□□□ -0.49
HDAC6-228ENST00000486227 PRKAG2Q9UGJ0 569 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 UBE2Q2LH0YL09 131 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 N4BP1O75113 896 aaKnown RBP12.02□□□□□ -0.49
HDAC6-228ENST00000486227 AFPP02771 609 aaKnown RBP12.02□□□□□ -0.49
HDAC6-228ENST00000486227 GYS1P13807 737 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 SARNPP82979 210 aaKnown RBP12.02□□□□□ -0.49
HDAC6-228ENST00000486227 APBA1Q02410 837 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 IQCB1Q15051 598 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 UNC13DQ70J99 1090 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 TADA2BQ86TJ2 420 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 CCDC125Q86Z20 511 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.02□□□□□ -0.49
HDAC6-228ENST00000486227 ANKFY1Q9P2R3 1169 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 FAM184BQ9ULE4 1060 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 AGTPBP1Q9UPW5 1226 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 HYOU1Q9Y4L1 999 aa12.02□□□□□ -0.49
HDAC6-228ENST00000486227 PALM3A6NDB9 673 aaPredicted RBP12.01□□□□□ -0.49
HDAC6-228ENST00000486227 E7EVH7 732 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 IGBP1P78318 339 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 LACTBP83111 547 aaPredicted RBP12.01□□□□□ -0.49
HDAC6-228ENST00000486227 BUB1BO60566 1050 aaPredicted RBP12.01□□□□□ -0.49
HDAC6-228ENST00000486227 ZBED6P86452 979 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 RAVER2Q9HCJ3 691 aaKnown RBP12.01□□□□□ -0.49
HDAC6-228ENST00000486227 C1orf112Q9NSG2 853 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 ZBTB12Q9Y330 459 aaPredicted RBP12.01□□□□□ -0.49
HDAC6-228ENST00000486227 POTEB3A0JP26 581 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 POTECB2RU33 542 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 ACTN4O43707 911 aaKnown RBP12.01□□□□□ -0.49
HDAC6-228ENST00000486227 CYP27A1Q02318 531 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 SPP2Q13103 211 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 E2F4Q16254 413 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 MUM1L1Q5H9M0 696 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 POTEBQ6S5H4 581 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 NYAP1Q6ZVC0 841 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 SLC7A3Q8WY07 619 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 PANX2Q96RD6 677 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 HINFPQ9BQA5 517 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 SSX2IPQ9Y2D8 614 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 UTP11Q9Y3A2 253 aaKnown RBP12.01□□□□□ -0.49
HDAC6-228ENST00000486227 RFX1P22670 979 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 LRRC63Q05C16 580 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 PPP1R18Q6NYC8 613 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 ZNF365Q70YC5 407 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 SRLQ86TD4 932 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 DHX40Q8IX18 779 aaKnown RBP12.01□□□□□ -0.49
HDAC6-228ENST00000486227 NACA2Q9H009 215 aa12.01□□□□□ -0.49
HDAC6-228ENST00000486227 GPR75-ASB3A0A0A6YYF3 556 aa12□□□□□ -0.49
HDAC6-228ENST00000486227 MYL7Q01449 175 aa12□□□□□ -0.49
HDAC6-228ENST00000486227 ZNF543Q08ER8 600 aa12□□□□□ -0.49
HDAC6-228ENST00000486227 TROAPQ12815 778 aa12□□□□□ -0.49
HDAC6-228ENST00000486227 C16orf86Q6ZW13 317 aa12□□□□□ -0.49
HDAC6-228ENST00000486227 MB21D1Q8N884 522 aa12□□□□□ -0.49
HDAC6-228ENST00000486227 RNF34Q969K3 372 aa12□□□□□ -0.49
HDAC6-228ENST00000486227 FAM193BQ96PV7 902 aaPredicted RBP12□□□□□ -0.49
HDAC6-228ENST00000486227 RIOK1Q9BRS2 568 aaKnown RBP12□□□□□ -0.49
HDAC6-228ENST00000486227 MAK16Q9BXY0 300 aaKnown RBP12□□□□□ -0.49
HDAC6-228ENST00000486227 HOXC10Q9NYD6 342 aa12□□□□□ -0.49
HDAC6-228ENST00000486227 P4HA1P13674 534 aa12□□□□□ -0.49
HDAC6-228ENST00000486227 TCP1P17987 556 aaKnown RBP12□□□□□ -0.49
HDAC6-228ENST00000486227 EHHADHQ08426 723 aa12□□□□□ -0.49
HDAC6-228ENST00000486227 E4F1Q66K89 784 aaPredicted RBP12□□□□□ -0.49
HDAC6-228ENST00000486227 RNF207Q6ZRF8 634 aa12□□□□□ -0.49
HDAC6-228ENST00000486227 KMT5AQ9NQR1 393 aa12□□□□□ -0.49
HDAC6-228ENST00000486227 FEZ2Q9UHY8 353 aaPredicted RBP12□□□□□ -0.49
HDAC6-228ENST00000486227 ANAPC4Q9UJX5 808 aa12□□□□□ -0.49
HDAC6-228ENST00000486227 ACCSQ96QU6 501 aa12□□□□□ -0.49
HDAC6-228ENST00000486227 CPSF2Q9P2I0 782 aaKnown RBP12□□□□□ -0.49
HDAC6-228ENST00000486227 HERC5Q9UII4 1024 aaKnown RBP12□□□□□ -0.49
HDAC6-228ENST00000486227 NWD1Q149M9 1564 aa12□□□□□ -0.49
HDAC6-228ENST00000486227 STAT3P40763 770 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 CCDC6Q16204 474 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 RMDN3Q96TC7 470 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 FBXO40Q9UH90 709 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 ASIC3Q9UHC3 531 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 UBR1Q8IWV7 1749 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 MFAP3LO75121 409 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 LRRN2O75325 713 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 CCND2P30279 289 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 SLC8A1P32418 973 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 EIF4A3P38919 411 aaKnown RBP11.99□□□□□ -0.49
HDAC6-228ENST00000486227 YARSP54577 528 aaKnown RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms