RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 C9orf50Q5SZB4 431 aa4.82□□□□□ -1.64
VPS13D-208ENST00000481484 IFIT1BQ5T764 474 aaKnown RBP4.82□□□□□ -1.64
VPS13D-208ENST00000481484 TAPT1Q6NXT6 567 aa4.82□□□□□ -1.64
VPS13D-208ENST00000481484 CXCL17Q6UXB2 119 aa4.82□□□□□ -1.64
VPS13D-208ENST00000481484 Q7L0L9 218 aa4.82□□□□□ -1.64
VPS13D-208ENST00000481484 RALYLQ86SE5 291 aaKnown RBP4.82□□□□□ -1.64
VPS13D-208ENST00000481484 SESTD1Q86VW0 696 aa4.82□□□□□ -1.64
VPS13D-208ENST00000481484 PLEKHM2Q8IWE5 1019 aa4.82□□□□□ -1.64
VPS13D-208ENST00000481484 ENAHQ8N8S7 591 aaPredicted RBP4.82□□□□□ -1.64
VPS13D-208ENST00000481484 OR6J1Q8NGC5 347 aa4.82□□□□□ -1.64
VPS13D-208ENST00000481484 NSUN6Q8TEA1 469 aaKnown RBP4.82□□□□□ -1.64
VPS13D-208ENST00000481484 CLEC4DQ8WXI8 215 aa4.82□□□□□ -1.64
VPS13D-208ENST00000481484 HERVK_113Q902F9 699 aa4.82□□□□□ -1.64
VPS13D-208ENST00000481484 VTI1AQ96AJ9 217 aa4.82□□□□□ -1.64
VPS13D-208ENST00000481484 TIFAQ96CG3 184 aa4.82□□□□□ -1.64
VPS13D-208ENST00000481484 PURBQ96QR8 312 aaKnown RBP4.82□□□□□ -1.64
VPS13D-208ENST00000481484 ZSCAN10Q96SZ4 725 aaPredicted RBP4.82□□□□□ -1.64
VPS13D-208ENST00000481484 SLC9A7Q96T83 725 aa4.82□□□□□ -1.64
VPS13D-208ENST00000481484 GAS2L1Q99501 681 aaPredicted RBP4.82□□□□□ -1.64
VPS13D-208ENST00000481484 MTG1Q9BT17 334 aaPredicted RBP4.82□□□□□ -1.64
VPS13D-208ENST00000481484 NOC4LQ9BVI4 516 aaKnown RBP4.82□□□□□ -1.64
VPS13D-208ENST00000481484 WDR11Q9BZH6 1224 aa4.82□□□□□ -1.64
VPS13D-208ENST00000481484 ALDH8A1Q9H2A2 487 aaPredicted RBP4.82□□□□□ -1.64
VPS13D-208ENST00000481484 MSRAQ9UJ68 235 aa4.82□□□□□ -1.64
VPS13D-208ENST00000481484 MRPL11Q9Y3B7 192 aaKnown RBP4.82□□□□□ -1.64
VPS13D-208ENST00000481484 MUC6Q6W4X9 2439 aa4.82□□□□□ -1.64
VPS13D-208ENST00000481484 WDR81Q562E7 1941 aa4.82□□□□□ -1.64
VPS13D-208ENST00000481484 FRMPD4Q14CM0 1322 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.81□□□□□ -1.64
VPS13D-208ENST00000481484 A6NJR5 290 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 DYNC1LI2O43237 492 aaPredicted RBP4.81□□□□□ -1.64
VPS13D-208ENST00000481484 DHX16O60231 1041 aaKnown RBP4.81□□□□□ -1.64
VPS13D-208ENST00000481484 CAND2O75155 1236 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 STAM2O75886 525 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 DDAH1O94760 285 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 GH1P01241 217 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 HOXD8P13378 290 aaPredicted RBP4.81□□□□□ -1.64
VPS13D-208ENST00000481484 CALML3P27482 149 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 PURAQ00577 322 aaKnown RBP4.81□□□□□ -1.64
VPS13D-208ENST00000481484 STXBP2Q15833 593 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 GNPTABQ3T906 1256 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 TMEM240Q5SV17 173 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 PPP1R26Q5T8A7 1209 aaPredicted RBP4.81□□□□□ -1.64
VPS13D-208ENST00000481484 TTC22Q5TAA0 569 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 CWC27Q6UX04 472 aaKnown RBP4.81□□□□□ -1.64
VPS13D-208ENST00000481484 KIAA1211Q6ZU35 1233 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 Q6ZVU0 165 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 RASGRP2Q7LDG7 609 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 FBXO11Q86XK2 927 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 NPAS3Q8IXF0 933 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 MEIOBQ8N635 442 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 PPTC7Q8NI37 304 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 AFAP1L1Q8TED9 768 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 MAP3K14Q99558 947 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 CDX2Q99626 313 aaPredicted RBP4.81□□□□□ -1.64
VPS13D-208ENST00000481484 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.81□□□□□ -1.643e-6■□□□□ 9.5
VPS13D-208ENST00000481484 AMNQ9BXJ7 453 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 SEMA6BQ9H3T3 888 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 NXF1Q9UBU9 619 aaKnown RBP4.81□□□□□ -1.64
VPS13D-208ENST00000481484 MTMR7Q9Y216 660 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 NOD1Q9Y239 953 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 PCDHA11Q9Y5I1 949 aa4.81□□□□□ -1.64
VPS13D-208ENST00000481484 EMSYQ7Z589 1322 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 XIRP2A4UGR9 3374 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 B4E1Z4 1266 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 DLL1O00548 723 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 ZBTB5O15062 677 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 B4GALT4O60513 344 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 EIF3JO75822 258 aaKnown RBP4.8□□□□□ -1.64
VPS13D-208ENST00000481484 F2P00734 622 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 FGBP02675 491 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 RPLP2P05387 115 aaKnown RBP4.8□□□□□ -1.64
VPS13D-208ENST00000481484 MMP3P08254 477 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 TXNP10599 105 aaKnown RBP4.8□□□□□ -1.64
VPS13D-208ENST00000481484 TGFB3P10600 412 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 CSF2RAP15509 400 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 CASTP20810 708 aaKnown RBP4.8□□□□□ -1.64
VPS13D-208ENST00000481484 ITGB8P26012 769 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 KIF5BP33176 963 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 SLC16A2P36021 539 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 HSD17B4P51659 736 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 BEX3Q00994 111 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 DHX9Q08211 1270 aaKnown RBP4.8□□□□□ -1.64
VPS13D-208ENST00000481484 GRM4Q14833 912 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 DGKDQ16760 1214 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 QRICH1Q2TAL8 776 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 USH1GQ495M9 461 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 INTS6LQ5JSJ4 861 aaKnown RBP4.8□□□□□ -1.64
VPS13D-208ENST00000481484 LCE2CQ5TA81 110 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 TTBK2Q6IQ55 1244 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 XRRA1Q6P2D8 792 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 FAM43BQ6ZT52 329 aaPredicted RBP4.8□□□□□ -1.64
VPS13D-208ENST00000481484 RETREG2Q8NC44 543 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 NCOA7Q8NI08 942 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 PHOSPHO2Q8TCD6 241 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 SYTL5Q8TDW5 730 aaPredicted RBP4.8□□□□□ -1.64
VPS13D-208ENST00000481484 MTMR8Q96EF0 704 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 RMDN3Q96TC7 470 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 LZTS2Q9BRK4 669 aa4.8□□□□□ -1.64
VPS13D-208ENST00000481484 SPZ1Q9BXG8 430 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms