RNA–Protein interactions for RNA: ENST00000479510.2

SYNGAP1-206, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 2

Gene SYNGAP1, Length 2,073 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-206ENST00000479510 SND1Q7KZF4 910 aaKnown RBP eCLIP27.1■■□□□ 1.93
SYNGAP1-206ENST00000479510 GSPT2Q8IYD1 628 aaKnown RBP27.1■■□□□ 1.93
SYNGAP1-206ENST00000479510 FAM76AQ8TAV0 307 aa27.1■■□□□ 1.93
SYNGAP1-206ENST00000479510 SH3GL2Q99962 352 aa27.1■■□□□ 1.93
SYNGAP1-206ENST00000479510 GANQ9H2C0 597 aa27.1■■□□□ 1.93
SYNGAP1-206ENST00000479510 TRAF3IP3Q9Y228 551 aa27.1■■□□□ 1.93
SYNGAP1-206ENST00000479510 BZW2Q9Y6E2 419 aaKnown RBP27.1■■□□□ 1.93
SYNGAP1-206ENST00000479510 UBAP1LF5GYI3 381 aa27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 CES2O00748 559 aa27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 EPB41P11171 864 aaKnown RBP27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 APOBEC3HQ6NTF7 200 aaKnown RBP27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 LRRC31Q6UY01 552 aa27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 HDAC7Q8WUI4 952 aa27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 MXD3Q9BW11 206 aa27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 KANSL2Q9H9L4 492 aa27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 F8W031 263 aaPredicted RBP27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 KRT18P05783 430 aaKnown RBP27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 EPS15P42566 896 aa27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 EZH2Q15910 746 aaKnown RBP27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 ASIC2Q16515 512 aa27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 Q4G0T1 1027 aa27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 GBP6Q6ZN66 633 aa27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 SRLQ86TD4 932 aa27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 IFT20Q8IY31 132 aa27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 MRIQ9BWK5 157 aa27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 FGFBP2Q9BYJ0 223 aa27.09■■□□□ 1.93
SYNGAP1-206ENST00000479510 RIMBP2O15034 1052 aa27.08■■□□□ 1.93
SYNGAP1-206ENST00000479510 HMGB2P26583 209 aaKnown RBP27.08■■□□□ 1.93
SYNGAP1-206ENST00000479510 NAP1L1P55209 391 aaKnown RBP27.08■■□□□ 1.93
SYNGAP1-206ENST00000479510 ARSHQ5FYA8 562 aa27.08■■□□□ 1.93
SYNGAP1-206ENST00000479510 NELFCDQ8IXH7 590 aa27.08■■□□□ 1.93
SYNGAP1-206ENST00000479510 ANKRD13CQ8N6S4 541 aa27.08■■□□□ 1.93
SYNGAP1-206ENST00000479510 SPATA31A6Q5VVP1 1343 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 GOLGA6CA6NDK9 693 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 USP17L15C9J2P7 530 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 USP17L13C9JLJ4 530 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 USP17L11C9JVI0 530 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 USP17L18D6R9N7 530 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 USP17L22D6RA61 530 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 USP17L17D6RBQ6 530 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 USP17L19D6RCP7 530 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 USP17L20D6RJB6 530 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 NCK2O43639 380 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 FOSP01100 380 aaPredicted RBP27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 GOLGA6DP0CG33 693 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 KLHL30Q0D2K2 578 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 USP17L24Q0WX57 530 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 PPFIA1Q13136 1202 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 USP17L6PQ6QN14 398 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 ETNPPLQ8TBG4 499 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 TBC1D5Q92609 795 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 GOLGA6AQ9NYA3 693 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 TBC1D7Q9P0N9 293 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 MYH10P35580 1976 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 ONECUT3O60422 494 aaPredicted RBP27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 PPFIA4O75335 1185 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 MED24O75448 989 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 CXCR5P32302 372 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 SPIRE1Q08AE8 756 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 CDC37Q16543 378 aaPredicted RBP27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 MEI1Q5TIA1 1274 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 TEX2Q8IWB9 1127 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 SYT2Q8N9I0 419 aaPredicted RBP27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 GJA10Q969M2 543 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 FAM20AQ96MK3 541 aa27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 RBM12Q9NTZ6 932 aaKnown RBP27.07■■□□□ 1.92
SYNGAP1-206ENST00000479510 A6NNZ2 444 aa27.06■■□□□ 1.92
SYNGAP1-206ENST00000479510 BUB1O43683 1085 aa27.06■■□□□ 1.92
SYNGAP1-206ENST00000479510 RPA1P27694 616 aa27.06■■□□□ 1.92
SYNGAP1-206ENST00000479510 KCNH2Q12809 1159 aa27.06■■□□□ 1.92
SYNGAP1-206ENST00000479510 RAPGEF1Q13905 1077 aa27.06■■□□□ 1.92
SYNGAP1-206ENST00000479510 TUBB8Q3ZCM7 444 aa27.06■■□□□ 1.92
SYNGAP1-206ENST00000479510 GJD4Q96KN9 370 aaPredicted RBP27.06■■□□□ 1.92
SYNGAP1-206ENST00000479510 GDAP1L1Q96MZ0 367 aa27.06■■□□□ 1.92
SYNGAP1-206ENST00000479510 GDF3Q9NR23 364 aa27.06■■□□□ 1.92
SYNGAP1-206ENST00000479510 DNM3Q9UQ16 869 aa27.06■■□□□ 1.92
SYNGAP1-206ENST00000479510 RRP15Q9Y3B9 282 aaKnown RBP27.06■■□□□ 1.92
SYNGAP1-206ENST00000479510 PDXKO00764 312 aa27.05■■□□□ 1.92
SYNGAP1-206ENST00000479510 PALMO75781 387 aa27.05■■□□□ 1.92
SYNGAP1-206ENST00000479510 ARHGAP4P98171 946 aa27.05■■□□□ 1.92
SYNGAP1-206ENST00000479510 APBA1Q02410 837 aa27.05■■□□□ 1.92
SYNGAP1-206ENST00000479510 SLFN13Q68D06 897 aa27.05■■□□□ 1.92
SYNGAP1-206ENST00000479510 EPM2AIP1Q7L775 607 aaPredicted RBP27.05■■□□□ 1.92
SYNGAP1-206ENST00000479510 FBXL5Q9UKA1 691 aa27.05■■□□□ 1.92
SYNGAP1-206ENST00000479510 MEIS2O14770 477 aa27.05■■□□□ 1.92
SYNGAP1-206ENST00000479510 ERCC3P19447 782 aa27.05■■□□□ 1.92
SYNGAP1-206ENST00000479510 NR2F2P24468 414 aa27.05■■□□□ 1.92
SYNGAP1-206ENST00000479510 IFI16Q16666 785 aaKnown RBP27.05■■□□□ 1.92
SYNGAP1-206ENST00000479510 KNOP1Q1ED39 458 aaKnown RBP27.05■■□□□ 1.92
SYNGAP1-206ENST00000479510 BMT2Q1RMZ1 405 aa27.05■■□□□ 1.92
SYNGAP1-206ENST00000479510 ZDHHC15Q96MV8 337 aa27.05■■□□□ 1.92
SYNGAP1-206ENST00000479510 ARMCX3Q9UH62 379 aaPredicted RBP27.05■■□□□ 1.92
SYNGAP1-206ENST00000479510 NPHP3-ACAD11A0A0J9YXS1 232 aa27.04■■□□□ 1.92
SYNGAP1-206ENST00000479510 MYO1CO00159 1063 aa27.04■■□□□ 1.92
SYNGAP1-206ENST00000479510 CALUO43852 315 aaPredicted RBP27.04■■□□□ 1.92
SYNGAP1-206ENST00000479510 NPM3O75607 178 aaKnown RBP27.04■■□□□ 1.92
SYNGAP1-206ENST00000479510 MATR3P43243 847 aaKnown RBP eCLIP27.04■■□□□ 1.92
SYNGAP1-206ENST00000479510 MMP14P50281 582 aa27.04■■□□□ 1.92
SYNGAP1-206ENST00000479510 GIT2Q14161 759 aa27.04■■□□□ 1.92
SYNGAP1-206ENST00000479510 RIN2Q8WYP3 895 aaPredicted RBP27.04■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms