RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 UPF3BQ9BZI7 483 aaKnown RBP26.75■■□□□ 1.87
C9orf3-215ENST00000478473 SH3GLB2Q9NR46 395 aa26.75■■□□□ 1.87
C9orf3-215ENST00000478473 EMSYQ7Z589 1322 aa26.74■■□□□ 1.87
C9orf3-215ENST00000478473 LGR5O75473 907 aa26.74■■□□□ 1.87
C9orf3-215ENST00000478473 GNAT1P11488 350 aa26.74■■□□□ 1.87
C9orf3-215ENST00000478473 AKAP17AQ02040 695 aaKnown RBP26.74■■□□□ 1.87
C9orf3-215ENST00000478473 TRIM50Q86XT4 487 aa26.74■■□□□ 1.87
C9orf3-215ENST00000478473 FAM177A1Q8N128 213 aaPredicted RBP26.74■■□□□ 1.87
C9orf3-215ENST00000478473 ATP6V0A1Q93050 837 aa26.74■■□□□ 1.87
C9orf3-215ENST00000478473 ZNF576Q9H609 170 aa26.74■■□□□ 1.87
C9orf3-215ENST00000478473 NCOA5Q9HCD5 579 aaKnown RBP26.74■■□□□ 1.87
C9orf3-215ENST00000478473 NRCAMQ92823 1304 aa26.73■■□□□ 1.87
C9orf3-215ENST00000478473 ADAMTS3O15072 1205 aa26.73■■□□□ 1.87
C9orf3-215ENST00000478473 EIF5BO60841 1220 aaKnown RBP26.73■■□□□ 1.87
C9orf3-215ENST00000478473 NBNO60934 754 aa26.73■■□□□ 1.87
C9orf3-215ENST00000478473 CCT2P78371 535 aaKnown RBP26.73■■□□□ 1.87
C9orf3-215ENST00000478473 ZNF618Q5T7W0 954 aa26.73■■□□□ 1.87
C9orf3-215ENST00000478473 REXO1Q8N1G1 1221 aaKnown RBP26.73■■□□□ 1.87
C9orf3-215ENST00000478473 CCDC148Q8NFR7 591 aa26.73■■□□□ 1.87
C9orf3-215ENST00000478473 SLC9A7Q96T83 725 aa26.73■■□□□ 1.87
C9orf3-215ENST00000478473 AGO4Q9HCK5 861 aaKnown RBP26.73■■□□□ 1.87
C9orf3-215ENST00000478473 JPH1Q9HDC5 661 aaPredicted RBP26.73■■□□□ 1.87
C9orf3-215ENST00000478473 IGLV3-22A0A075B6J6 115 aa26.72■■□□□ 1.87
C9orf3-215ENST00000478473 TREHO43280 583 aa26.72■■□□□ 1.87
C9orf3-215ENST00000478473 ATG7O95352 703 aa26.72■■□□□ 1.87
C9orf3-215ENST00000478473 ARP10275 920 aa26.72■■□□□ 1.87
C9orf3-215ENST00000478473 MBTPS1Q14703 1052 aa26.72■■□□□ 1.87
C9orf3-215ENST00000478473 UTP14CQ5TAP6 766 aaKnown RBP26.72■■□□□ 1.87
C9orf3-215ENST00000478473 RPAINQ86UA6 219 aa26.72■■□□□ 1.87
C9orf3-215ENST00000478473 BICD2Q8TD16 824 aa26.72■■□□□ 1.87
C9orf3-215ENST00000478473 SLC26A6Q9BXS9 759 aa26.72■■□□□ 1.87
C9orf3-215ENST00000478473 SMARCAD1Q9H4L7 1026 aa26.72■■□□□ 1.87
C9orf3-215ENST00000478473 PDRG1Q9NUG6 133 aa26.72■■□□□ 1.87
C9orf3-215ENST00000478473 ERAP1Q9NZ08 941 aa26.72■■□□□ 1.87
C9orf3-215ENST00000478473 SLC9A2Q9UBY0 812 aa26.72■■□□□ 1.87
C9orf3-215ENST00000478473 MSRAQ9UJ68 235 aa26.72■■□□□ 1.87
C9orf3-215ENST00000478473 PCDHA11Q9Y5I1 949 aa26.72■■□□□ 1.87
C9orf3-215ENST00000478473 ATP2A2P16615 1042 aaKnown RBP26.71■■□□□ 1.87
C9orf3-215ENST00000478473 CIITAP33076 1130 aa26.71■■□□□ 1.87
C9orf3-215ENST00000478473 ITGB3BPQ13352 177 aaPredicted RBP26.71■■□□□ 1.87
C9orf3-215ENST00000478473 GRIN2CQ14957 1233 aa26.71■■□□□ 1.87
C9orf3-215ENST00000478473 JAKMIP3Q5VZ66 844 aa26.71■■□□□ 1.87
C9orf3-215ENST00000478473 CNKSR3Q6P9H4 555 aa26.71■■□□□ 1.87
C9orf3-215ENST00000478473 PCYT2Q99447 389 aa26.71■■□□□ 1.87
C9orf3-215ENST00000478473 FTOQ9C0B1 505 aaKnown RBP eCLIP26.71■■□□□ 1.87
C9orf3-215ENST00000478473 SETD4Q9NVD3 440 aa26.71■■□□□ 1.87
C9orf3-215ENST00000478473 YBX2Q9Y2T7 364 aaKnown RBP26.71■■□□□ 1.87
C9orf3-215ENST00000478473 FAM86B1E9PN63 330 aa26.7■■□□□ 1.86
C9orf3-215ENST00000478473 FAM86B2P0C5J1 330 aa26.7■■□□□ 1.86
C9orf3-215ENST00000478473 SP4Q02446 784 aa26.7■■□□□ 1.86
C9orf3-215ENST00000478473 LMBR1Q8WVP7 490 aa26.7■■□□□ 1.86
C9orf3-215ENST00000478473 SDF4Q9BRK5 362 aa26.7■■□□□ 1.86
C9orf3-215ENST00000478473 MBLAC1A4D2B0 266 aaPredicted RBP26.69■■□□□ 1.86
C9orf3-215ENST00000478473 ZBBXA8MT70 800 aa26.69■■□□□ 1.86
C9orf3-215ENST00000478473 DHX15O43143 795 aaKnown RBP26.69■■□□□ 1.86
C9orf3-215ENST00000478473 MKRN4PQ13434 485 aaPredicted RBP26.69■■□□□ 1.86
C9orf3-215ENST00000478473 TRIM22Q8IYM9 498 aa26.69■■□□□ 1.86
C9orf3-215ENST00000478473 IGKV6D-21A0A0A0MT36 114 aa26.68■■□□□ 1.86
C9orf3-215ENST00000478473 ABHD14A-ACY1A0A1B0GW23 586 aa26.68■■□□□ 1.86
C9orf3-215ENST00000478473 RSPH10B2B2RC85 870 aa26.68■■□□□ 1.86
C9orf3-215ENST00000478473 EFCAB14O75071 495 aa26.68■■□□□ 1.86
C9orf3-215ENST00000478473 DEXIO95424 95 aa26.68■■□□□ 1.86
C9orf3-215ENST00000478473 RSPH10BP0C881 870 aa26.68■■□□□ 1.86
C9orf3-215ENST00000478473 ACTR2P61160 394 aa26.68■■□□□ 1.86
C9orf3-215ENST00000478473 FAM26DQ5JW98 314 aa26.68■■□□□ 1.86
C9orf3-215ENST00000478473 PLPPR4Q7Z2D5 763 aa26.68■■□□□ 1.86
C9orf3-215ENST00000478473 MYLIPQ8WY64 445 aa26.68■■□□□ 1.86
C9orf3-215ENST00000478473 PKD2L1Q9P0L9 805 aa26.68■■□□□ 1.86
C9orf3-215ENST00000478473 CHD7Q9P2D1 2997 aa26.68■■□□□ 1.86
C9orf3-215ENST00000478473 EDIL3O43854 480 aa26.67■■□□□ 1.86
C9orf3-215ENST00000478473 THPOP40225 353 aa26.67■■□□□ 1.86
C9orf3-215ENST00000478473 SETQ01105 290 aaPredicted RBP26.67■■□□□ 1.86
C9orf3-215ENST00000478473 SSRP1Q08945 709 aaKnown RBP26.67■■□□□ 1.86
C9orf3-215ENST00000478473 TAF2Q6P1X5 1199 aa26.67■■□□□ 1.86
C9orf3-215ENST00000478473 CPLX2Q6PUV4 134 aaKnown RBP26.67■■□□□ 1.86
C9orf3-215ENST00000478473 VPS54Q9P1Q0 977 aa26.67■■□□□ 1.86
C9orf3-215ENST00000478473 GBF1Q92538 1859 aa26.66■■□□□ 1.86
C9orf3-215ENST00000478473 CPLX1O14810 134 aa26.66■■□□□ 1.86
C9orf3-215ENST00000478473 ZNF76P36508 570 aa26.66■■□□□ 1.86
C9orf3-215ENST00000478473 WDR5P61964 334 aaKnown RBP26.66■■□□□ 1.86
C9orf3-215ENST00000478473 PLEKHG4Q58EX7 1191 aa26.66■■□□□ 1.86
C9orf3-215ENST00000478473 PLA2G4DQ86XP0 818 aa26.66■■□□□ 1.86
C9orf3-215ENST00000478473 GLG1Q92896 1179 aa26.66■■□□□ 1.86
C9orf3-215ENST00000478473 SLC28A3Q9HAS3 691 aa26.66■■□□□ 1.86
C9orf3-215ENST00000478473 M0R2N6 131 aa26.65■■□□□ 1.86
C9orf3-215ENST00000478473 PPFIA3O75145 1194 aa26.65■■□□□ 1.86
C9orf3-215ENST00000478473 CCNE2O96020 404 aa26.65■■□□□ 1.86
C9orf3-215ENST00000478473 SLC26A2P50443 739 aa26.65■■□□□ 1.86
C9orf3-215ENST00000478473 USP11P51784 963 aa26.65■■□□□ 1.86
C9orf3-215ENST00000478473 RABGGTBP53611 331 aa26.65■■□□□ 1.86
C9orf3-215ENST00000478473 PPFIA1Q13136 1202 aa26.65■■□□□ 1.86
C9orf3-215ENST00000478473 TCTN1Q2MV58 587 aa26.65■■□□□ 1.86
C9orf3-215ENST00000478473 MARCH8Q5T0T0 291 aa26.65■■□□□ 1.86
C9orf3-215ENST00000478473 GALNT17Q6IS24 598 aa26.65■■□□□ 1.86
C9orf3-215ENST00000478473 HERC6Q8IVU3 1022 aa26.65■■□□□ 1.86
C9orf3-215ENST00000478473 DAGLBQ8NCG7 672 aa26.65■■□□□ 1.86
C9orf3-215ENST00000478473 LENG9Q96B70 501 aa26.65■■□□□ 1.86
C9orf3-215ENST00000478473 LARP6Q9BRS8 491 aaKnown RBP26.65■■□□□ 1.86
C9orf3-215ENST00000478473 NKX2-4Q9H2Z4 354 aa26.65■■□□□ 1.86
C9orf3-215ENST00000478473 EYSQ5T1H1 3165 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms