RNA–Protein interactions for RNA: ENST00000477836.1

SMARCB1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2

Gene SMARCB1, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-206ENST00000477836 RSPO4Q2I0M5 234 aaPredicted RBP11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 HSDL1Q3SXM5 330 aa11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 USH1GQ495M9 461 aa11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 PAN2Q504Q3 1202 aaKnown RBP11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 CWF19L1Q69YN2 538 aaKnown RBP11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 CCDC105Q8IYK2 499 aa11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 IFNL3Q8IZI9 196 aa11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 CYP2W1Q8TAV3 490 aa11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 NSUN6Q8TEA1 469 aaKnown RBP11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 OSBP2Q969R2 916 aa11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 SPATA33Q96N06 139 aa11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 SEMA4AQ9H3S1 761 aa11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 RWDD1Q9H446 243 aaPredicted RBP11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 RNPEPQ9H4A4 650 aa11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 IL17RBQ9NRM6 502 aa11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 PNMA2Q9UL42 364 aa11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 PLXNA4Q9HCM2 1894 aa11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 MYO10Q9HD67 2058 aa11.37□□□□□ -0.59
SMARCB1-206ENST00000477836 C2CD4DB7Z1M9 353 aa11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 PATL2C9JE40 543 aaKnown RBP11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 ASGR2P07307 311 aa11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 SRGAP2BP0DMP2 458 aa11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 HOXD8P13378 290 aaPredicted RBP11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 GNAT2P19087 354 aa11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 HOXC8P31273 242 aa11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 HDAC1Q13547 482 aaPredicted RBP11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 COL9A2Q14055 689 aaPredicted RBP11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 DUSP6Q16828 381 aa11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 ANKRD54Q6NXT1 300 aa11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 CMTR2Q8IYT2 770 aaKnown RBP11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 DCLK2Q8N568 766 aa11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 RGS22Q8NE09 1264 aa11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 TBC1D5Q92609 795 aa11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 IWS1Q96ST2 819 aa11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 RMDN3Q96TC7 470 aa11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 CDCA3Q99618 268 aaPredicted RBP11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 C16orf70Q9BSU1 422 aa11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 R4GN57 208 aa11.36□□□□□ -0.59
SMARCB1-206ENST00000477836 WDR19Q8NEZ3 1342 aa11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 FSD2A1L4K1 749 aa11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 H3BRB1 525 aa11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 HMMRO75330 724 aa11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 EIF3JO75822 258 aaKnown RBP11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 EIF2AK2P19525 551 aaKnown RBP11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 AOC1P19801 751 aa11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 PPARAQ07869 468 aa11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 FAM26DQ5JW98 314 aa11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 ARHGEF16Q5VV41 709 aa11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 MYSM1Q5VVJ2 828 aa11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 LLGL2Q6P1M3 1020 aa11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 SYCE2Q6PIF2 218 aa11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 DTWD2Q8NBA8 298 aa11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 SYTL5Q8TDW5 730 aaPredicted RBP11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 APPBP2Q92624 585 aa11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 TUT1Q9H6E5 874 aaKnown RBP11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 COL20A1Q9P218 1284 aa11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 CDH22Q9UJ99 828 aa11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 RALYQ9UKM9 306 aaKnown RBP11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 ASPMQ8IZT6 3477 aa11.35□□□□□ -0.59
SMARCB1-206ENST00000477836 CEP250Q9BV73 2442 aa11.34□□□□□ -0.59
SMARCB1-206ENST00000477836 M0R2C6 588 aa11.34□□□□□ -0.59
SMARCB1-206ENST00000477836 GGPS1O95749 300 aa11.34□□□□□ -0.59
SMARCB1-206ENST00000477836 CHRNA1P02708 482 aa11.34□□□□□ -0.59
SMARCB1-206ENST00000477836 GNAT1P11488 350 aa11.34□□□□□ -0.59
SMARCB1-206ENST00000477836 CELF3Q5SZQ8 465 aaKnown RBP11.34□□□□□ -0.59
SMARCB1-206ENST00000477836 TMEM184AQ6ZMB5 413 aa11.34□□□□□ -0.59
SMARCB1-206ENST00000477836 RUBCNQ92622 972 aa11.34□□□□□ -0.59
SMARCB1-206ENST00000477836 NACAP1Q9BZK3 213 aa11.34□□□□□ -0.59
SMARCB1-206ENST00000477836 NAPBQ9H115 298 aa11.34□□□□□ -0.59
SMARCB1-206ENST00000477836 POMKQ9H5K3 350 aa11.34□□□□□ -0.59
SMARCB1-206ENST00000477836 SETD4Q9NVD3 440 aa11.34□□□□□ -0.59
SMARCB1-206ENST00000477836 TTC3P53804 2025 aa11.34□□□□□ -0.59
SMARCB1-206ENST00000477836 CHD8Q9HCK8 2581 aa11.33□□□□□ -0.6
SMARCB1-206ENST00000477836 MAP1BP46821 2468 aaKnown RBP11.33□□□□□ -0.6
SMARCB1-206ENST00000477836 RANBP6O60518 1105 aaKnown RBP11.33□□□□□ -0.6
SMARCB1-206ENST00000477836 IGHDP01880 384 aa11.33□□□□□ -0.6
SMARCB1-206ENST00000477836 NPR3P17342 541 aa11.33□□□□□ -0.6
SMARCB1-206ENST00000477836 ERVFC1P60507 584 aa11.33□□□□□ -0.6
SMARCB1-206ENST00000477836 KCNC3Q14003 757 aa11.33□□□□□ -0.6
SMARCB1-206ENST00000477836 LPIN1Q14693 890 aa11.33□□□□□ -0.6
SMARCB1-206ENST00000477836 SPOUT1Q5T280 376 aaKnown RBP11.33□□□□□ -0.6
SMARCB1-206ENST00000477836 CHAMP1Q96JM3 812 aa11.33□□□□□ -0.6
SMARCB1-206ENST00000477836 RTP3Q9BQQ7 232 aa11.33□□□□□ -0.6
SMARCB1-206ENST00000477836 EHMT1Q9H9B1 1298 aa11.33□□□□□ -0.6
SMARCB1-206ENST00000477836 LIMD1Q9UGP4 676 aa11.33□□□□□ -0.6
SMARCB1-206ENST00000477836 LGALS2P05162 132 aa11.32□□□□□ -0.6
SMARCB1-206ENST00000477836 NR3C2P08235 984 aa11.32□□□□□ -0.6
SMARCB1-206ENST00000477836 HOXB8P17481 243 aaPredicted RBP11.32□□□□□ -0.6
SMARCB1-206ENST00000477836 NOVP48745 357 aa11.32□□□□□ -0.6
SMARCB1-206ENST00000477836 GATMP50440 423 aa11.32□□□□□ -0.6
SMARCB1-206ENST00000477836 ARHGAP4P98171 946 aa11.32□□□□□ -0.6
SMARCB1-206ENST00000477836 UBE3AQ05086 875 aa11.32□□□□□ -0.6
SMARCB1-206ENST00000477836 CTDSPL2Q05D32 466 aa11.32□□□□□ -0.6
SMARCB1-206ENST00000477836 PLPP4Q5VZY2 271 aa11.32□□□□□ -0.6
SMARCB1-206ENST00000477836 CES5AQ6NT32 575 aa11.32□□□□□ -0.6
SMARCB1-206ENST00000477836 SIRT2Q8IXJ6 389 aa11.32□□□□□ -0.6
SMARCB1-206ENST00000477836 LINC01599Q8WXQ3 324 aa11.32□□□□□ -0.6
SMARCB1-206ENST00000477836 RIN2Q8WYP3 895 aaPredicted RBP11.32□□□□□ -0.6
SMARCB1-206ENST00000477836 TMEM47Q9BQJ4 181 aa11.32□□□□□ -0.6
SMARCB1-206ENST00000477836 MLXIPQ9HAP2 919 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms