RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 TCF7P36402 384 aaPredicted RBP21.55■■□□□ 1.04
CCDC88B-206ENST00000473405 IKBKEQ14164 716 aa21.55■■□□□ 1.04
CCDC88B-206ENST00000473405 KRT32Q14532 448 aa21.55■■□□□ 1.04
CCDC88B-206ENST00000473405 PPP1R18Q6NYC8 613 aa21.55■■□□□ 1.04
CCDC88B-206ENST00000473405 ARNTL2Q8WYA1 636 aa21.55■■□□□ 1.04
CCDC88B-206ENST00000473405 MTCH2Q9Y6C9 303 aa21.55■■□□□ 1.04
CCDC88B-206ENST00000473405 BRWD1Q9NSI6 2320 aa21.54■■□□□ 1.04
CCDC88B-206ENST00000473405 KLF18A0A0U1RQI7 1052 aa21.54■■□□□ 1.04
CCDC88B-206ENST00000473405 CAND2O75155 1236 aa21.54■■□□□ 1.04
CCDC88B-206ENST00000473405 NAPAP54920 295 aa21.54■■□□□ 1.04
CCDC88B-206ENST00000473405 PLEKHG4Q58EX7 1191 aa21.54■■□□□ 1.04
CCDC88B-206ENST00000473405 MICALL1Q8N3F8 863 aa21.54■■□□□ 1.04
CCDC88B-206ENST00000473405 DBF4BQ8NFT6 615 aa21.54■■□□□ 1.04
CCDC88B-206ENST00000473405 ATXN2LQ8WWM7 1075 aaKnown RBP21.54■■□□□ 1.04
CCDC88B-206ENST00000473405 KCNB2Q92953 911 aa21.54■■□□□ 1.04
CCDC88B-206ENST00000473405 RIC8AQ9NPQ8 531 aa21.54■■□□□ 1.04
CCDC88B-206ENST00000473405 JADE2Q9NQC1 790 aa21.54■■□□□ 1.04
CCDC88B-206ENST00000473405 PKD2L1Q9P0L9 805 aa21.54■■□□□ 1.04
CCDC88B-206ENST00000473405 GSTTP1A0A1W2PQM5 241 aa21.53■■□□□ 1.04
CCDC88B-206ENST00000473405 GOLGA8AA7E2F4 631 aa21.53■■□□□ 1.04
CCDC88B-206ENST00000473405 GOLGA8BA8MQT2 603 aa21.53■■□□□ 1.04
CCDC88B-206ENST00000473405 STXBP3O00186 592 aa21.53■■□□□ 1.04
CCDC88B-206ENST00000473405 CTSHP09668 335 aa21.53■■□□□ 1.04
CCDC88B-206ENST00000473405 GNAT1P11488 350 aa21.53■■□□□ 1.04
CCDC88B-206ENST00000473405 CPA1P15085 419 aa21.53■■□□□ 1.04
CCDC88B-206ENST00000473405 CDC27P30260 824 aa21.53■■□□□ 1.04
CCDC88B-206ENST00000473405 RCAN1P53805 252 aa21.53■■□□□ 1.04
CCDC88B-206ENST00000473405 ARHGAP4P98171 946 aa21.53■■□□□ 1.04
CCDC88B-206ENST00000473405 KRT40Q6A162 431 aa21.53■■□□□ 1.04
CCDC88B-206ENST00000473405 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.53■■□□□ 1.04
CCDC88B-206ENST00000473405 SYMPKQ92797 1274 aaKnown RBP21.53■■□□□ 1.04
CCDC88B-206ENST00000473405 RAD9AQ99638 391 aa21.53■■□□□ 1.04
CCDC88B-206ENST00000473405 ZBED2Q9BTP6 218 aa21.53■■□□□ 1.04
CCDC88B-206ENST00000473405 V9GY48 417 aaPredicted RBP21.53■■□□□ 1.04
CCDC88B-206ENST00000473405 NLRC5Q86WI3 1866 aa21.52■■□□□ 1.04
CCDC88B-206ENST00000473405 LPXNO60711 386 aa21.52■■□□□ 1.04
CCDC88B-206ENST00000473405 HMGB1P09429 215 aaKnown RBP21.52■■□□□ 1.04
CCDC88B-206ENST00000473405 ADCY7P51828 1080 aa21.52■■□□□ 1.04
CCDC88B-206ENST00000473405 TEX2Q8IWB9 1127 aa21.52■■□□□ 1.04
CCDC88B-206ENST00000473405 CYP2W1Q8TAV3 490 aa21.52■■□□□ 1.04
CCDC88B-206ENST00000473405 PGBD1Q96JS3 809 aa21.52■■□□□ 1.04
CCDC88B-206ENST00000473405 BARHL2Q9NY43 387 aa21.52■■□□□ 1.04
CCDC88B-206ENST00000473405 COL4A6Q14031 1691 aa21.52■■□□□ 1.04
CCDC88B-206ENST00000473405 NRCAMQ92823 1304 aa21.52■■□□□ 1.03
CCDC88B-206ENST00000473405 NID2Q14112 1375 aa21.51■■□□□ 1.03
CCDC88B-206ENST00000473405 hCG_1984214I3L0E3 225 aa21.51■■□□□ 1.03
CCDC88B-206ENST00000473405 FAM117BQ6P1L5 589 aa21.51■■□□□ 1.03
CCDC88B-206ENST00000473405 RUFY4Q6ZNE9 571 aa21.51■■□□□ 1.03
CCDC88B-206ENST00000473405 ZNF713Q8N859 430 aaPredicted RBP21.51■■□□□ 1.03
CCDC88B-206ENST00000473405 SEPT1Q8WYJ6 367 aa21.51■■□□□ 1.03
CCDC88B-206ENST00000473405 ASB2Q96Q27 587 aa21.51■■□□□ 1.03
CCDC88B-206ENST00000473405 EHMT1Q9H9B1 1298 aa21.51■■□□□ 1.03
CCDC88B-206ENST00000473405 KCNH7Q9NS40 1196 aa21.51■■□□□ 1.03
CCDC88B-206ENST00000473405 LINC01553A4QN01 128 aa21.5■■□□□ 1.03
CCDC88B-206ENST00000473405 MAFGO15525 162 aa21.5■■□□□ 1.03
CCDC88B-206ENST00000473405 MARK3P27448 753 aa21.5■■□□□ 1.03
CCDC88B-206ENST00000473405 HSPA4P34932 840 aa21.5■■□□□ 1.03
CCDC88B-206ENST00000473405 CLK2P49760 499 aaKnown RBP21.5■■□□□ 1.03
CCDC88B-206ENST00000473405 GRB10Q13322 594 aa21.5■■□□□ 1.03
CCDC88B-206ENST00000473405 FAM26DQ5JW98 314 aa21.5■■□□□ 1.03
CCDC88B-206ENST00000473405 MXRA8Q9BRK3 442 aa21.5■■□□□ 1.03
CCDC88B-206ENST00000473405 ANO3Q9BYT9 981 aa21.5■■□□□ 1.03
CCDC88B-206ENST00000473405 JPH1Q9HDC5 661 aaPredicted RBP21.5■■□□□ 1.03
CCDC88B-206ENST00000473405 TMEM260Q9NX78 707 aa21.5■■□□□ 1.03
CCDC88B-206ENST00000473405 ERAP1Q9NZ08 941 aa21.5■■□□□ 1.03
CCDC88B-206ENST00000473405 SNX14Q9Y5W7 946 aa21.5■■□□□ 1.03
CCDC88B-206ENST00000473405 LOXHD1Q8IVV2 1947 aa21.5■■□□□ 1.03
CCDC88B-206ENST00000473405 GTPBP6O43824 516 aaPredicted RBP21.49■■□□□ 1.03
CCDC88B-206ENST00000473405 ADD1P35611 737 aaKnown RBP21.49■■□□□ 1.03
CCDC88B-206ENST00000473405 APOBRQ0VD83 1088 aa21.49■■□□□ 1.03
CCDC88B-206ENST00000473405 PPFIA1Q13136 1202 aa21.49■■□□□ 1.03
CCDC88B-206ENST00000473405 MARCH8Q5T0T0 291 aa21.49■■□□□ 1.03
CCDC88B-206ENST00000473405 GDPD5Q8WTR4 605 aa21.49■■□□□ 1.03
CCDC88B-206ENST00000473405 CCDC136Q96JN2 1154 aa21.49■■□□□ 1.03
CCDC88B-206ENST00000473405 JAKMIP1Q96N16 626 aaKnown RBP21.49■■□□□ 1.03
CCDC88B-206ENST00000473405 PCYT2Q99447 389 aa21.49■■□□□ 1.03
CCDC88B-206ENST00000473405 RALGAPA2Q2PPJ7 1873 aa21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 MBLAC1A4D2B0 266 aaPredicted RBP21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 SMCO2A6NFE2 343 aa21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 FOSP01100 380 aaPredicted RBP21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 CHRNA1P02708 482 aa21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 AMHP03971 560 aa21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 SREBF1P36956 1147 aa21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 METAP2P50579 478 aaKnown RBP eCLIP21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 MRPS5P82675 430 aaKnown RBP21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 HTRA4P83105 476 aaPredicted RBP21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 ITGB3BPQ13352 177 aaPredicted RBP21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 GRIK4Q16099 956 aa21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 CEP55Q53EZ4 464 aa21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 Q6ZUG5 572 aa21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 RPAINQ86UA6 219 aa21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 MYOCDQ8IZQ8 938 aa21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 SEPT8Q92599 483 aa21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 GLG1Q92896 1179 aa21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 BRF1Q92994 677 aa21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 SLC9A2Q9UBY0 812 aa21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 TUBE1Q9UJT0 475 aa21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 MTUS1Q9ULD2 1270 aa21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 TCF20Q9UGU0 1960 aaKnown RBP21.48■■□□□ 1.03
CCDC88B-206ENST00000473405 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms