RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 BDP1A6H8Y1 2624 aa15.54■□□□□ 0.08
CHD3-209ENST00000473376 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.54■□□□□ 0.08
CHD3-209ENST00000473376 MBLAC1A4D2B0 266 aaPredicted RBP15.54■□□□□ 0.08
CHD3-209ENST00000473376 SPDYE3A6NKU9 549 aa15.54■□□□□ 0.08
CHD3-209ENST00000473376 FOSP01100 380 aaPredicted RBP15.54■□□□□ 0.08
CHD3-209ENST00000473376 ITGB5P18084 799 aa15.54■□□□□ 0.08
CHD3-209ENST00000473376 MTMR1Q13613 665 aa15.54■□□□□ 0.08
CHD3-209ENST00000473376 PTPROQ16827 1216 aa15.54■□□□□ 0.08
CHD3-209ENST00000473376 PPP1R18Q6NYC8 613 aa15.54■□□□□ 0.08
CHD3-209ENST00000473376 SYNE3Q6ZMZ3 975 aa15.54■□□□□ 0.08
CHD3-209ENST00000473376 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.54■□□□□ 0.08
CHD3-209ENST00000473376 LMBR1Q8WVP7 490 aa15.54■□□□□ 0.08
CHD3-209ENST00000473376 MYL10Q9BUA6 226 aa15.54■□□□□ 0.08
CHD3-209ENST00000473376 SMARCAD1Q9H4L7 1026 aa15.54■□□□□ 0.08
CHD3-209ENST00000473376 JADE2Q9NQC1 790 aa15.54■□□□□ 0.08
CHD3-209ENST00000473376 RRN3P2A6NIE6 340 aa15.53■□□□□ 0.08
CHD3-209ENST00000473376 PLEKHA8P1O95397 391 aa15.53■□□□□ 0.08
CHD3-209ENST00000473376 TCF7P36402 384 aaPredicted RBP15.53■□□□□ 0.08
CHD3-209ENST00000473376 TFF2Q03403 129 aa15.53■□□□□ 0.08
CHD3-209ENST00000473376 MYOCDQ8IZQ8 938 aa15.53■□□□□ 0.08
CHD3-209ENST00000473376 ZFP91Q96JP5 570 aaPredicted RBP15.53■□□□□ 0.08
CHD3-209ENST00000473376 IFIH1Q9BYX4 1025 aaKnown RBP15.53■□□□□ 0.08
CHD3-209ENST00000473376 RWDD3Q9Y3V2 267 aa15.53■□□□□ 0.08
CHD3-209ENST00000473376 NFASCO94856 1347 aa15.52■□□□□ 0.08
CHD3-209ENST00000473376 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.52■□□□□ 0.08
CHD3-209ENST00000473376 GSTTP1A0A1W2PQM5 241 aa15.52■□□□□ 0.08
CHD3-209ENST00000473376 SORBS3O60504 671 aa15.52■□□□□ 0.08
CHD3-209ENST00000473376 ATP9AO75110 1047 aa15.52■□□□□ 0.08
CHD3-209ENST00000473376 RB1P06400 928 aa15.52■□□□□ 0.08
CHD3-209ENST00000473376 HMGB1P09429 215 aaKnown RBP15.52■□□□□ 0.08
CHD3-209ENST00000473376 SLC26A2P50443 739 aa15.52■□□□□ 0.08
CHD3-209ENST00000473376 ARHGAP4P98171 946 aa15.52■□□□□ 0.08
CHD3-209ENST00000473376 KRT32Q14532 448 aa15.52■□□□□ 0.08
CHD3-209ENST00000473376 PUS10Q3MIT2 529 aaKnown RBP15.52■□□□□ 0.08
CHD3-209ENST00000473376 TMCO2Q7Z6W1 182 aaPredicted RBP15.52■□□□□ 0.08
CHD3-209ENST00000473376 FBXO22Q8NEZ5 403 aa15.52■□□□□ 0.08
CHD3-209ENST00000473376 PIBF1Q8WXW3 757 aa15.52■□□□□ 0.08
CHD3-209ENST00000473376 MRPL38Q96DV4 380 aaKnown RBP15.52■□□□□ 0.08
CHD3-209ENST00000473376 ANO2Q9NQ90 1003 aa15.52■□□□□ 0.08
CHD3-209ENST00000473376 PCDHA6Q9UN73 950 aa15.52■□□□□ 0.08
CHD3-209ENST00000473376 ARIH1Q9Y4X5 557 aaPredicted RBP15.52■□□□□ 0.08
CHD3-209ENST00000473376 PCDHA8Q9Y5H6 950 aa15.52■□□□□ 0.08
CHD3-209ENST00000473376 PTPRSQ13332 1948 aa15.52■□□□□ 0.07
CHD3-209ENST00000473376 XIRP2A4UGR9 3374 aa15.52■□□□□ 0.07
CHD3-209ENST00000473376 C5orf67F2Z3F1 127 aa15.51■□□□□ 0.07
CHD3-209ENST00000473376 H3BNC9 293 aa15.51■□□□□ 0.07
CHD3-209ENST00000473376 NCK2O43639 380 aa15.51■□□□□ 0.07
CHD3-209ENST00000473376 KCNQ1P51787 676 aa15.51■□□□□ 0.07
CHD3-209ENST00000473376 EXOSC10Q01780 885 aaKnown RBP15.51■□□□□ 0.07
CHD3-209ENST00000473376 COL19A1Q14993 1142 aa15.51■□□□□ 0.07
CHD3-209ENST00000473376 LEXMQ3ZCV2 418 aa15.51■□□□□ 0.07
CHD3-209ENST00000473376 EPC2Q52LR7 807 aa15.51■□□□□ 0.07
CHD3-209ENST00000473376 KRT40Q6A162 431 aa15.51■□□□□ 0.07
CHD3-209ENST00000473376 MCTP2Q6DN12 878 aa15.51■□□□□ 0.07
CHD3-209ENST00000473376 APOA5Q6Q788 366 aa15.51■□□□□ 0.07
CHD3-209ENST00000473376 DHX32Q7L7V1 743 aaKnown RBP15.51■□□□□ 0.07
CHD3-209ENST00000473376 PLPPR4Q7Z2D5 763 aa15.51■□□□□ 0.07
CHD3-209ENST00000473376 GDPD5Q8WTR4 605 aa15.51■□□□□ 0.07
CHD3-209ENST00000473376 NEK1Q96PY6 1258 aa15.51■□□□□ 0.07
CHD3-209ENST00000473376 YME1L1Q96TA2 773 aa15.51■□□□□ 0.07
CHD3-209ENST00000473376 RIC8AQ9NPQ8 531 aa15.51■□□□□ 0.07
CHD3-209ENST00000473376 CHRNA1P02708 482 aa15.5■□□□□ 0.07
CHD3-209ENST00000473376 MGAT3Q09327 533 aa15.5■□□□□ 0.07
CHD3-209ENST00000473376 PPFIA1Q13136 1202 aa15.5■□□□□ 0.07
CHD3-209ENST00000473376 AP3B2Q13367 1082 aa15.5■□□□□ 0.07
CHD3-209ENST00000473376 TIGD5Q53EQ6 642 aa15.5■□□□□ 0.07
CHD3-209ENST00000473376 UTP14CQ5TAP6 766 aaKnown RBP15.5■□□□□ 0.07
CHD3-209ENST00000473376 NIPA1Q7RTP0 329 aa15.5■□□□□ 0.07
CHD3-209ENST00000473376 SPRED2Q7Z698 418 aa15.5■□□□□ 0.07
CHD3-209ENST00000473376 TRIM50Q86XT4 487 aa15.5■□□□□ 0.07
CHD3-209ENST00000473376 NME8Q8N427 588 aa15.5■□□□□ 0.07
CHD3-209ENST00000473376 GLG1Q92896 1179 aa15.5■□□□□ 0.07
CHD3-209ENST00000473376 MXRA8Q9BRK3 442 aa15.5■□□□□ 0.07
CHD3-209ENST00000473376 FTHL17Q9BXU8 183 aa15.5■□□□□ 0.07
CHD3-209ENST00000473376 JPH1Q9HDC5 661 aaPredicted RBP15.5■□□□□ 0.07
CHD3-209ENST00000473376 KCNH7Q9NS40 1196 aa15.5■□□□□ 0.07
CHD3-209ENST00000473376 TUBE1Q9UJT0 475 aa15.5■□□□□ 0.07
CHD3-209ENST00000473376 REV3LO60673 3130 aa15.5■□□□□ 0.07
CHD3-209ENST00000473376 FUT2Q10981 343 aa15.49■□□□□ 0.07
CHD3-209ENST00000473376 GRIK4Q16099 956 aa15.49■□□□□ 0.07
CHD3-209ENST00000473376 CEP55Q53EZ4 464 aa15.49■□□□□ 0.07
CHD3-209ENST00000473376 MARCH8Q5T0T0 291 aa15.49■□□□□ 0.07
CHD3-209ENST00000473376 IER5Q5VY09 327 aa15.49■□□□□ 0.07
CHD3-209ENST00000473376 CENPQQ7L2Z9 268 aaPredicted RBP15.49■□□□□ 0.07
CHD3-209ENST00000473376 TMEM192Q8IY95 271 aa15.49■□□□□ 0.07
CHD3-209ENST00000473376 FBXL16Q8N461 479 aa15.49■□□□□ 0.07
CHD3-209ENST00000473376 IL17RAQ96F46 866 aa15.49■□□□□ 0.07
CHD3-209ENST00000473376 C17orf80Q9BSJ5 609 aa15.49■□□□□ 0.07
CHD3-209ENST00000473376 LMAN2LQ9H0V9 348 aa15.49■□□□□ 0.07
CHD3-209ENST00000473376 AZI2Q9H6S1 392 aa15.49■□□□□ 0.07
CHD3-209ENST00000473376 SLC9A2Q9UBY0 812 aa15.49■□□□□ 0.07
CHD3-209ENST00000473376 MICAL3Q7RTP6 2002 aa15.49■□□□□ 0.07
CHD3-209ENST00000473376 SIP14410 1827 aa15.48■□□□□ 0.07
CHD3-209ENST00000473376 CCDC196A0A1B0GTZ2 297 aa15.48■□□□□ 0.07
CHD3-209ENST00000473376 MEIS1O00470 390 aa15.48■□□□□ 0.07
CHD3-209ENST00000473376 ZBTB43O43298 467 aa15.48■□□□□ 0.07
CHD3-209ENST00000473376 ATG7O95352 703 aa15.48■□□□□ 0.07
CHD3-209ENST00000473376 CTSHP09668 335 aa15.48■□□□□ 0.07
CHD3-209ENST00000473376 COL9A1P20849 921 aa15.48■□□□□ 0.07
CHD3-209ENST00000473376 TSHZ1Q6ZSZ6 1077 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms