RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 REXO2Q9Y3B8 237 aaKnown RBP11.71□□□□□ -0.53
CHD3-208ENST00000470531 A0A1W2PRG0 241 aa11.71□□□□□ -0.54
CHD3-208ENST00000470531 SLC37A4O43826 429 aa11.71□□□□□ -0.54
CHD3-208ENST00000470531 TRIM49P0CI25 452 aa11.71□□□□□ -0.54
CHD3-208ENST00000470531 TRIM49CP0CI26 452 aa11.71□□□□□ -0.54
CHD3-208ENST00000470531 TRIM28Q13263 835 aaKnown RBP11.71□□□□□ -0.54
CHD3-208ENST00000470531 ALKBH5Q6P6C2 394 aaKnown RBP11.71□□□□□ -0.54
CHD3-208ENST00000470531 GSTA5Q7RTV2 222 aa11.71□□□□□ -0.54
CHD3-208ENST00000470531 WDR66Q8TBY9 1149 aa11.71□□□□□ -0.54
CHD3-208ENST00000470531 IKZF4Q9H2S9 585 aa11.71□□□□□ -0.54
CHD3-208ENST00000470531 ASIC3Q9UHC3 531 aa11.71□□□□□ -0.54
CHD3-208ENST00000470531 UTP11Q9Y3A2 253 aaKnown RBP11.71□□□□□ -0.54
CHD3-208ENST00000470531 COL4A3BPQ9Y5P4 624 aa11.71□□□□□ -0.54
CHD3-208ENST00000470531 GOLGA8IPA6NC78 632 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 GOLGA8JA6NMD2 632 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 CCDC169A6NNP5 214 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 EPHB4P54760 987 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 TUBB2AQ13885 445 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 UAP1Q16222 522 aaPredicted RBP11.7□□□□□ -0.54
CHD3-208ENST00000470531 PDXDC2PQ6P474 469 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 HS2ST1Q7LGA3 356 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 MTMR8Q96EF0 704 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 BICD1Q96G01 975 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 TUBB2BQ9BVA1 445 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 ANKRD2Q9GZV1 360 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 THAP9Q9H5L6 903 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 GGA1Q9UJY5 639 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 SH3BP1Q9Y3L3 701 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 CDHR2Q9BYE9 1310 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 CTNND1O60716 968 aaKnown RBP11.7□□□□□ -0.54
CHD3-208ENST00000470531 FGGP02679 453 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 GLI1P08151 1106 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 EPB41P11171 864 aaKnown RBP11.7□□□□□ -0.54
CHD3-208ENST00000470531 TRAPPC3LQ5T215 181 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 EFCAB13Q8IY85 973 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 TSEN2Q8NCE0 465 aaKnown RBP11.7□□□□□ -0.54
CHD3-208ENST00000470531 GDAP1Q8TB36 358 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 TRIM51Q9BSJ1 452 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 DONSONQ9NYP3 566 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 RGL1Q9NZL6 768 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 LTN1O94822 1766 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 A0A087X0T9 212 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 PHF20L1A8MW92 1017 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 PLA2G4BP0C869 781 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 FAM228BP0C875 321 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 KCNH2Q12809 1159 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 RIOK1Q9BRS2 568 aaKnown RBP11.7□□□□□ -0.54
CHD3-208ENST00000470531 ATP6V0A2Q9Y487 856 aa11.7□□□□□ -0.54
CHD3-208ENST00000470531 C1orf167Q5SNV9 1468 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 MAGOHP61326 146 aaKnown RBP11.69□□□□□ -0.54
CHD3-208ENST00000470531 FAM196AQ6ZSG2 479 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 PPM1KQ8N3J5 372 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 MAGOHBQ96A72 148 aaKnown RBP11.69□□□□□ -0.54
CHD3-208ENST00000470531 KIF4AO95239 1232 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 H2AFZP0C0S5 128 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 AKR1B1P15121 316 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 AMPD2Q01433 879 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 WDR59Q6PJI9 974 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 MMS22LQ6ZRQ5 1243 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 H2AFVQ71UI9 128 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 B4GALNT4Q76KP1 1039 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 GLYCTKQ8IVS8 523 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 CCDC170Q8IYT3 715 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 ERMNQ8TAM6 284 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 SHISA4Q96DD7 197 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 RNPC3Q96LT9 517 aaKnown RBP11.69□□□□□ -0.54
CHD3-208ENST00000470531 SEMA6BQ9H3T3 888 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 GCNT4Q9P109 453 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 HDAC9Q9UKV0 1011 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 A0A087WUV0 522 aaPredicted RBP11.69□□□□□ -0.54
CHD3-208ENST00000470531 CYTH3O43739 400 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 ACSL3O95573 720 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 TRAPPC10P48553 1259 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 CD248Q9HCU0 757 aa11.69□□□□□ -0.54
CHD3-208ENST00000470531 SRGNP10124 158 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 STAT1P42224 750 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 C2CD6Q53TS8 623 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 HIBCHQ6NVY1 386 aaPredicted RBP11.68□□□□□ -0.54
CHD3-208ENST00000470531 TRAPPC11Q7Z392 1133 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 KCNK18Q7Z418 384 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 ZNF34Q8IZ26 560 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 VGLL2Q8N8G2 317 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 IL17RBQ9NRM6 502 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 MED1Q15648 1581 aaPredicted RBP11.68□□□□□ -0.54
CHD3-208ENST00000470531 CLRN2A0PK11 232 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 AGPSO00116 658 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 FLOT1O75955 427 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 DLATP10515 647 aaKnown RBP11.68□□□□□ -0.54
CHD3-208ENST00000470531 COASYQ13057 564 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 NBPF20Q3BBV1 942 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 EAPPQ56P03 285 aaPredicted RBP11.68□□□□□ -0.54
CHD3-208ENST00000470531 AP1ARQ63HQ0 302 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 TRIM68Q6AZZ1 485 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 TBC1D1Q86TI0 1168 aaPredicted RBP11.68□□□□□ -0.54
CHD3-208ENST00000470531 SFR1Q86XK3 245 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 IRF2BP1Q8IU81 584 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 BRIP1Q9BX63 1249 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 BSDC1Q9NW68 430 aaPredicted RBP11.68□□□□□ -0.54
CHD3-208ENST00000470531 BARHL2Q9NY43 387 aa11.68□□□□□ -0.54
CHD3-208ENST00000470531 FAM237AA0A1B0GTK4 181 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms