RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 AVPR2P30518 371 aa13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 RCAN1P53805 252 aa13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 CHMP4BP1P59074 171 aa13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 DLX2Q07687 328 aaPredicted RBP13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 APOBRQ0VD83 1088 aa13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 TOB2Q14106 344 aaPredicted RBP13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 CLUL1Q15846 466 aa13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 CDC37Q16543 378 aaPredicted RBP13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 SLC30A10Q6XR72 485 aa13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 MICU3Q86XE3 530 aa13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 TMEM192Q8IY95 271 aa13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 DHX38Q92620 1227 aaKnown RBP13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 BACH2Q9BYV9 841 aa13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 PDRG1Q9NUG6 133 aa13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 CACNA1HO95180 2353 aa13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 COL4A6Q14031 1691 aa13.72□□□□□ -0.21
SQSTM1-206ENST00000466342 MYH7BA7E2Y1 1941 aa13.72□□□□□ -0.21
SQSTM1-206ENST00000466342 AMHP03971 560 aa13.72□□□□□ -0.21
SQSTM1-206ENST00000466342 GNAQP50148 359 aa13.72□□□□□ -0.21
SQSTM1-206ENST00000466342 EVCP57679 992 aa13.72□□□□□ -0.21
SQSTM1-206ENST00000466342 SMAD4Q13485 552 aaKnown RBP13.72□□□□□ -0.21
SQSTM1-206ENST00000466342 PPP2R5BQ15173 497 aa13.72□□□□□ -0.21
SQSTM1-206ENST00000466342 USH1GQ495M9 461 aa13.72□□□□□ -0.21
SQSTM1-206ENST00000466342 FBXO11Q86XK2 927 aa13.72□□□□□ -0.21
SQSTM1-206ENST00000466342 MCF2L2Q86YR7 1114 aa13.72□□□□□ -0.21
SQSTM1-206ENST00000466342 RAB11FIP4Q86YS3 637 aa13.72□□□□□ -0.21
SQSTM1-206ENST00000466342 FANCBQ8NB91 859 aa13.72□□□□□ -0.21
SQSTM1-206ENST00000466342 JMJD4Q9H9V9 463 aa13.72□□□□□ -0.21
SQSTM1-206ENST00000466342 RBM28Q9NW13 759 aaKnown RBP13.72□□□□□ -0.21
SQSTM1-206ENST00000466342 MRPL11Q9Y3B7 192 aaKnown RBP13.72□□□□□ -0.21
SQSTM1-206ENST00000466342 NID2Q14112 1375 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 GOLGA8BA8MQT2 603 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 H0Y858 1186 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 CYTH3O43739 400 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 DHX16O60231 1041 aaKnown RBP13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 EDNRBP24530 442 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 SMARCA1P28370 1054 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 ID4P47928 161 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 VCPP55072 806 aaKnown RBP13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 PDE4DQ08499 809 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 RTN1Q16799 776 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 SLC35G1Q2M3R5 365 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 QRICH1Q2TAL8 776 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 ASCL5Q7RTU5 278 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 MYOCDQ8IZQ8 938 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 SCFD2Q8WU76 684 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 COPS5Q92905 334 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 MTMR8Q96EF0 704 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 LZTS2Q9BRK4 669 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 SPZ1Q9BXG8 430 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 RIOX1Q9H6W3 641 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 VAT1LQ9HCJ6 419 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 TLR9Q9NR96 1032 aa13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 NAP1L2Q9ULW6 460 aaPredicted RBP13.71□□□□□ -0.21
SQSTM1-206ENST00000466342 FAM186AA6NE01 2351 aa13.71□□□□□ -0.22
SQSTM1-206ENST00000466342 KIAA1217Q5T5P2 1943 aa13.7□□□□□ -0.22
SQSTM1-206ENST00000466342 RIF1Q5UIP0 2472 aaKnown RBP13.7□□□□□ -0.22
SQSTM1-206ENST00000466342 GOLGA8AA7E2F4 631 aa13.7□□□□□ -0.22
SQSTM1-206ENST00000466342 LGR5O75473 907 aa13.7□□□□□ -0.22
SQSTM1-206ENST00000466342 PLEKHA8P1O95397 391 aa13.7□□□□□ -0.22
SQSTM1-206ENST00000466342 METAP2P50579 478 aaKnown RBP eCLIP13.7□□□□□ -0.22
SQSTM1-206ENST00000466342 NUBP1P53384 320 aa13.7□□□□□ -0.22
SQSTM1-206ENST00000466342 SIGLEC14Q08ET2 396 aa13.7□□□□□ -0.22
SQSTM1-206ENST00000466342 HYAL1Q12794 435 aa13.7□□□□□ -0.22
SQSTM1-206ENST00000466342 TRAF1Q13077 416 aa13.7□□□□□ -0.22
SQSTM1-206ENST00000466342 MKRN4PQ13434 485 aaPredicted RBP13.7□□□□□ -0.22
SQSTM1-206ENST00000466342 TMTC3Q6ZXV5 915 aa13.7□□□□□ -0.22
SQSTM1-206ENST00000466342 DBF4BQ8NFT6 615 aa13.7□□□□□ -0.22
SQSTM1-206ENST00000466342 KIF2CQ99661 725 aa13.7□□□□□ -0.22
SQSTM1-206ENST00000466342 AMNQ9BXJ7 453 aa13.7□□□□□ -0.22
SQSTM1-206ENST00000466342 CD207Q9UJ71 328 aa13.7□□□□□ -0.22
SQSTM1-206ENST00000466342 TRPC6Q9Y210 931 aa13.7□□□□□ -0.22
SQSTM1-206ENST00000466342 LOC730098B7Z3J9 87 aa13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 ZBTB5O15062 677 aa13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 TXNP10599 105 aaKnown RBP13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 NEK4P51957 841 aa13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 PTK7Q13308 1070 aa13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 MBTPS1Q14703 1052 aa13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 ANKRD1Q15327 319 aa13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 ZNF618Q5T7W0 954 aa13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 TRAF7Q6Q0C0 670 aa13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 SRBD1Q8N5C6 995 aaKnown RBP13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 SAMD3Q8N6K7 520 aa13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 NSUN6Q8TEA1 469 aaKnown RBP13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 TBC1D5Q92609 795 aa13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 TBC1D32Q96NH3 1257 aa13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 IWS1Q96ST2 819 aa13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 YME1L1Q96TA2 773 aa13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 LMAN2LQ9H0V9 348 aa13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 MAP3K20Q9NYL2 800 aaKnown RBP13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 GTF2IRD1Q9UHL9 959 aa13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 VPS13AQ96RL7 3174 aa13.69□□□□□ -0.22
SQSTM1-206ENST00000466342 CCDC196A0A1B0GTZ2 297 aa13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 PRR23AA6NEV1 266 aa13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 PDIA3P30101 505 aaKnown RBP13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 CDC27P30260 824 aa13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 AK2P54819 239 aa13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 ADAM15Q13444 863 aa13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 TRIM71Q2Q1W2 868 aaKnown RBP13.68□□□□□ -0.22
SQSTM1-206ENST00000466342 HOMER1Q86YM7 354 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms