RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 WDR64B1ANS9 1081 aa22.36■■□□□ 1.17
COL9A3-204ENST00000463487 KIF28PB7ZC32 967 aa22.36■■□□□ 1.17
COL9A3-204ENST00000463487 H3BRB1 525 aa22.36■■□□□ 1.17
COL9A3-204ENST00000463487 SYT1P21579 422 aa22.36■■□□□ 1.17
COL9A3-204ENST00000463487 SFNP31947 248 aa22.36■■□□□ 1.17
COL9A3-204ENST00000463487 JAK3P52333 1124 aa22.36■■□□□ 1.17
COL9A3-204ENST00000463487 RTP1P59025 263 aa22.36■■□□□ 1.17
COL9A3-204ENST00000463487 CHMP4BP1P59074 171 aa22.36■■□□□ 1.17
COL9A3-204ENST00000463487 PTPN11Q06124 597 aaPredicted RBP22.36■■□□□ 1.17
COL9A3-204ENST00000463487 MFSD10Q14728 455 aa22.36■■□□□ 1.17
COL9A3-204ENST00000463487 CALCRLQ16602 461 aa22.36■■□□□ 1.17
COL9A3-204ENST00000463487 LRRC26Q2I0M4 334 aa22.36■■□□□ 1.17
COL9A3-204ENST00000463487 UTP14CQ5TAP6 766 aaKnown RBP22.36■■□□□ 1.17
COL9A3-204ENST00000463487 FAM160B1Q5W0V3 765 aa22.36■■□□□ 1.17
COL9A3-204ENST00000463487 ETNPPLQ8TBG4 499 aa22.36■■□□□ 1.17
COL9A3-204ENST00000463487 GLG1Q92896 1179 aa22.36■■□□□ 1.17
COL9A3-204ENST00000463487 SMARCAD1Q9H4L7 1026 aa22.36■■□□□ 1.17
COL9A3-204ENST00000463487 TUT1Q9H6E5 874 aaKnown RBP22.36■■□□□ 1.17
COL9A3-204ENST00000463487 KCNMB3Q9NPA1 279 aa22.36■■□□□ 1.17
COL9A3-204ENST00000463487 EMSYQ7Z589 1322 aa22.35■■□□□ 1.17
COL9A3-204ENST00000463487 DHX15O43143 795 aaKnown RBP22.35■■□□□ 1.17
COL9A3-204ENST00000463487 MCM7P33993 719 aa22.35■■□□□ 1.17
COL9A3-204ENST00000463487 PSEN2P49810 448 aa22.35■■□□□ 1.17
COL9A3-204ENST00000463487 PSMC6P62333 389 aa22.35■■□□□ 1.17
COL9A3-204ENST00000463487 FAM47CQ5HY64 1035 aa22.35■■□□□ 1.17
COL9A3-204ENST00000463487 POTEDQ86YR6 584 aa22.35■■□□□ 1.17
COL9A3-204ENST00000463487 C7orf31Q8N865 590 aa22.35■■□□□ 1.17
COL9A3-204ENST00000463487 RDM1Q8NG50 284 aa22.35■■□□□ 1.17
COL9A3-204ENST00000463487 ERAP1Q9NZ08 941 aa22.35■■□□□ 1.17
COL9A3-204ENST00000463487 PRKAG2Q9UGJ0 569 aa22.35■■□□□ 1.17
COL9A3-204ENST00000463487 GSTTP1A0A1W2PQM5 241 aa22.34■■□□□ 1.17
COL9A3-204ENST00000463487 BACH1O14867 736 aa22.34■■□□□ 1.17
COL9A3-204ENST00000463487 STX6O43752 255 aa22.34■■□□□ 1.17
COL9A3-204ENST00000463487 PSMD10O75832 226 aa22.34■■□□□ 1.17
COL9A3-204ENST00000463487 PSAPP07602 524 aa22.34■■□□□ 1.17
COL9A3-204ENST00000463487 SLC26A2P50443 739 aa22.34■■□□□ 1.17
COL9A3-204ENST00000463487 KIAA0753Q2KHM9 967 aa22.34■■□□□ 1.17
COL9A3-204ENST00000463487 NBPF20Q3BBV1 942 aa22.34■■□□□ 1.17
COL9A3-204ENST00000463487 TRIM60Q495X7 471 aa22.34■■□□□ 1.17
COL9A3-204ENST00000463487 ANKRD33Q7Z3H0 272 aa22.34■■□□□ 1.17
COL9A3-204ENST00000463487 SLC43A3Q8NBI5 491 aa22.34■■□□□ 1.17
COL9A3-204ENST00000463487 TOX2Q96NM4 488 aa22.34■■□□□ 1.17
COL9A3-204ENST00000463487 UIMC1Q96RL1 719 aa22.34■■□□□ 1.17
COL9A3-204ENST00000463487 C16orf70Q9BSU1 422 aa22.34■■□□□ 1.17
COL9A3-204ENST00000463487 PCDHA10Q9Y5I2 948 aa22.34■■□□□ 1.17
COL9A3-204ENST00000463487 SCN10AQ9Y5Y9 1956 aa22.33■■□□□ 1.17
COL9A3-204ENST00000463487 PQBP1O60828 265 aaKnown RBP22.33■■□□□ 1.17
COL9A3-204ENST00000463487 ATG7O95352 703 aa22.33■■□□□ 1.17
COL9A3-204ENST00000463487 SUPT20HL2P0C7V6 817 aa22.33■■□□□ 1.17
COL9A3-204ENST00000463487 KAT2BQ92831 832 aa22.33■■□□□ 1.17
COL9A3-204ENST00000463487 HAS3O00219 553 aa22.32■■□□□ 1.16
COL9A3-204ENST00000463487 CHMP2AO43633 222 aa22.32■■□□□ 1.16
COL9A3-204ENST00000463487 LGR5O75473 907 aa22.32■■□□□ 1.16
COL9A3-204ENST00000463487 CCNE2O96020 404 aa22.32■■□□□ 1.16
COL9A3-204ENST00000463487 CDK7P50613 346 aa22.32■■□□□ 1.16
COL9A3-204ENST00000463487 STAT5BP51692 787 aa22.32■■□□□ 1.16
COL9A3-204ENST00000463487 ZNF174Q15697 407 aa22.32■■□□□ 1.16
COL9A3-204ENST00000463487 PLPPR4Q7Z2D5 763 aa22.32■■□□□ 1.16
COL9A3-204ENST00000463487 MIER3Q7Z3K6 550 aa22.32■■□□□ 1.16
COL9A3-204ENST00000463487 SESTD1Q86VW0 696 aa22.32■■□□□ 1.16
COL9A3-204ENST00000463487 C7orf61Q8IZ16 206 aa22.32■■□□□ 1.16
COL9A3-204ENST00000463487 SPRYD3Q8NCJ5 442 aa22.32■■□□□ 1.16
COL9A3-204ENST00000463487 ZSCAN16Q9H4T2 348 aaPredicted RBP22.32■■□□□ 1.16
COL9A3-204ENST00000463487 DISC1Q9NRI5 854 aa22.32■■□□□ 1.16
COL9A3-204ENST00000463487 PCDHA12Q9UN75 941 aa22.32■■□□□ 1.16
COL9A3-204ENST00000463487 NOD1Q9Y239 953 aa22.32■■□□□ 1.16
COL9A3-204ENST00000463487 LAD1O00515 517 aa22.31■■□□□ 1.16
COL9A3-204ENST00000463487 GNAT1P11488 350 aa22.31■■□□□ 1.16
COL9A3-204ENST00000463487 TLE2Q04725 743 aa22.31■■□□□ 1.16
COL9A3-204ENST00000463487 PPP2R5CQ13362 524 aa22.31■■□□□ 1.16
COL9A3-204ENST00000463487 ABHD15Q6UXT9 468 aa22.31■■□□□ 1.16
COL9A3-204ENST00000463487 TRIM50Q86XT4 487 aa22.31■■□□□ 1.16
COL9A3-204ENST00000463487 UNC45AQ9H3U1 944 aa22.31■■□□□ 1.16
COL9A3-204ENST00000463487 ZNF302Q9NR11 478 aa22.31■■□□□ 1.16
COL9A3-204ENST00000463487 CLTBP09497 229 aa22.3■■□□□ 1.16
COL9A3-204ENST00000463487 OR52Z1P0C646 297 aa22.3■■□□□ 1.16
COL9A3-204ENST00000463487 ANP32AP39687 249 aaKnown RBP22.3■■□□□ 1.16
COL9A3-204ENST00000463487 TMEM266Q2M3C6 531 aa22.3■■□□□ 1.16
COL9A3-204ENST00000463487 PDXDC2PQ6P474 469 aa22.3■■□□□ 1.16
COL9A3-204ENST00000463487 AFAP1L1Q8TED9 768 aa22.3■■□□□ 1.16
COL9A3-204ENST00000463487 HAS1Q92839 578 aa22.3■■□□□ 1.16
COL9A3-204ENST00000463487 ATP6V0A1Q93050 837 aa22.3■■□□□ 1.16
COL9A3-204ENST00000463487 DAXXQ9UER7 740 aaPredicted RBP22.3■■□□□ 1.16
COL9A3-204ENST00000463487 MTMR6Q9Y217 621 aa22.3■■□□□ 1.16
COL9A3-204ENST00000463487 GRIN2DO15399 1336 aa22.3■■□□□ 1.16
COL9A3-204ENST00000463487 IGKV6D-21A0A0A0MT36 114 aa22.29■■□□□ 1.16
COL9A3-204ENST00000463487 DKC1O60832 514 aaKnown RBP eCLIP22.29■■□□□ 1.16
COL9A3-204ENST00000463487 BMP15O95972 392 aa22.29■■□□□ 1.16
COL9A3-204ENST00000463487 SWSAP1Q6NVH7 229 aa22.29■■□□□ 1.16
COL9A3-204ENST00000463487 FERMT3Q86UX7 667 aa22.29■■□□□ 1.16
COL9A3-204ENST00000463487 FAM126BQ8IXS8 530 aa22.29■■□□□ 1.16
COL9A3-204ENST00000463487 CKAP2LQ8IYA6 745 aa22.29■■□□□ 1.16
COL9A3-204ENST00000463487 GJA10Q969M2 543 aa22.29■■□□□ 1.16
COL9A3-204ENST00000463487 FAM167AQ96KS9 214 aa22.29■■□□□ 1.16
COL9A3-204ENST00000463487 RAB34Q9BZG1 259 aa22.29■■□□□ 1.16
COL9A3-204ENST00000463487 TTC12Q9H892 705 aaPredicted RBP22.29■■□□□ 1.16
COL9A3-204ENST00000463487 PRDM5Q9NQX1 630 aaPredicted RBP22.29■■□□□ 1.16
COL9A3-204ENST00000463487 GTF2IRD1Q9UHL9 959 aa22.29■■□□□ 1.16
COL9A3-204ENST00000463487 CEP131Q9UPN4 1083 aa22.29■■□□□ 1.16
COL9A3-204ENST00000463487 TRPC6Q9Y210 931 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms