RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 TNNI2P48788 182 aa13.67□□□□□ -0.22
HDAC4-208ENST00000463007 ORC2Q13416 577 aaPredicted RBP13.67□□□□□ -0.22
HDAC4-208ENST00000463007 KLHDC7AQ5VTJ3 777 aa13.67□□□□□ -0.22
HDAC4-208ENST00000463007 MCTP2Q6DN12 878 aa13.67□□□□□ -0.22
HDAC4-208ENST00000463007 MMTAG2Q9BU76 263 aaKnown RBP13.67□□□□□ -0.22
HDAC4-208ENST00000463007 LSM14BQ9BX40 385 aaKnown RBP13.67□□□□□ -0.22
HDAC4-208ENST00000463007 PLAAQ9Y263 795 aa13.67□□□□□ -0.22
HDAC4-208ENST00000463007 FRMD3A2A2Y4 597 aa13.67□□□□□ -0.22
HDAC4-208ENST00000463007 USP17L5A8MUK1 530 aa13.67□□□□□ -0.22
HDAC4-208ENST00000463007 CEP104O60308 925 aa13.67□□□□□ -0.22
HDAC4-208ENST00000463007 IFT20Q8IY31 132 aa13.67□□□□□ -0.22
HDAC4-208ENST00000463007 UHMK1Q8TAS1 419 aaKnown RBP13.67□□□□□ -0.22
HDAC4-208ENST00000463007 MYH7BA7E2Y1 1941 aa13.67□□□□□ -0.22
HDAC4-208ENST00000463007 PSME4Q14997 1843 aa13.67□□□□□ -0.22
HDAC4-208ENST00000463007 TDP2O95551 362 aa13.67□□□□□ -0.22
HDAC4-208ENST00000463007 PRPF4BQ13523 1007 aaKnown RBP13.67□□□□□ -0.22
HDAC4-208ENST00000463007 MEX3CQ5U5Q3 659 aaKnown RBP13.67□□□□□ -0.22
HDAC4-208ENST00000463007 KRT25Q7Z3Z0 450 aa13.67□□□□□ -0.22
HDAC4-208ENST00000463007 MMGT1Q8N4V1 131 aa13.67□□□□□ -0.22
HDAC4-208ENST00000463007 CASKIN2Q8WXE0 1202 aa13.67□□□□□ -0.22
HDAC4-208ENST00000463007 SCLT1Q96NL6 688 aa13.67□□□□□ -0.22
HDAC4-208ENST00000463007 PIGSQ96S52 555 aa13.67□□□□□ -0.22
HDAC4-208ENST00000463007 NPHP3-ACAD11A0A0J9YXS1 232 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 GOLGA6L10A6NI86 522 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 hCG_1984214I3L0E3 225 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 HGSO14964 777 aaPredicted RBP13.66□□□□□ -0.22
HDAC4-208ENST00000463007 ACTN1P12814 892 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 SETQ01105 290 aaPredicted RBP13.66□□□□□ -0.22
HDAC4-208ENST00000463007 MKRN4PQ13434 485 aaPredicted RBP13.66□□□□□ -0.22
HDAC4-208ENST00000463007 SF3B2Q13435 895 aaKnown RBP13.66□□□□□ -0.22
HDAC4-208ENST00000463007 LLGL1Q15334 1064 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 CNNM4Q6P4Q7 775 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 MSL3Q8N5Y2 521 aaKnown RBP13.66□□□□□ -0.22
HDAC4-208ENST00000463007 ZNF713Q8N859 430 aaPredicted RBP13.66□□□□□ -0.22
HDAC4-208ENST00000463007 AK8Q96MA6 479 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 MTMR9Q96QG7 549 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 DPH5Q9H2P9 285 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 RAD51CO43502 376 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 SHMT1P34896 483 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 GTF2IP78347 998 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 E2F5Q15329 346 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 TCERG1LQ5VWI1 586 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 CHADLQ6NUI6 762 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 KCNK18Q7Z418 384 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 KIRREL3Q8IZU9 778 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 SNX29Q8TEQ0 813 aa13.66□□□□□ -0.22
HDAC4-208ENST00000463007 DDX47Q9H0S4 455 aaKnown RBP13.66□□□□□ -0.22
HDAC4-208ENST00000463007 SHOX2O60902 331 aaPredicted RBP13.65□□□□□ -0.22
HDAC4-208ENST00000463007 TRIM37O94972 964 aa13.65□□□□□ -0.22
HDAC4-208ENST00000463007 NONOQ15233 471 aaKnown RBP eCLIP13.65□□□□□ -0.22
HDAC4-208ENST00000463007 CCT8L2Q96SF2 557 aa13.65□□□□□ -0.22
HDAC4-208ENST00000463007 FGFBP2Q9BYJ0 223 aa13.65□□□□□ -0.22
HDAC4-208ENST00000463007 CUEDC2Q9H467 287 aa13.65□□□□□ -0.22
HDAC4-208ENST00000463007 GOPCQ9HD26 462 aa13.65□□□□□ -0.22
HDAC4-208ENST00000463007 A0A087X0T9 212 aa13.65□□□□□ -0.22
HDAC4-208ENST00000463007 GOLGA6L7A0A1B0GV03 622 aa13.65□□□□□ -0.22
HDAC4-208ENST00000463007 TLDC2A0PJX2 215 aa13.65□□□□□ -0.22
HDAC4-208ENST00000463007 FAM228BP0C875 321 aa13.65□□□□□ -0.22
HDAC4-208ENST00000463007 AKR1B1P15121 316 aa13.65□□□□□ -0.22
HDAC4-208ENST00000463007 COPB2P35606 906 aa13.65□□□□□ -0.22
HDAC4-208ENST00000463007 MAP2K2P36507 400 aa13.65□□□□□ -0.22
HDAC4-208ENST00000463007 CLK2P49760 499 aaKnown RBP13.65□□□□□ -0.22
HDAC4-208ENST00000463007 AMPD3Q01432 767 aa13.65□□□□□ -0.22
HDAC4-208ENST00000463007 COBLL1Q53SF7 1204 aa13.65□□□□□ -0.22
HDAC4-208ENST00000463007 KRT27Q7Z3Y8 459 aa13.65□□□□□ -0.22
HDAC4-208ENST00000463007 DDX12PQ92771 950 aa13.65□□□□□ -0.22
HDAC4-208ENST00000463007 QTRT2Q9H974 415 aaKnown RBP13.65□□□□□ -0.22
HDAC4-208ENST00000463007 MAGEF1Q9HAY2 307 aa13.65□□□□□ -0.22
HDAC4-208ENST00000463007 PPP1R11O60927 126 aaPredicted RBP13.65□□□□□ -0.23
HDAC4-208ENST00000463007 APOBEC3HQ6NTF7 200 aaKnown RBP13.65□□□□□ -0.23
HDAC4-208ENST00000463007 EMBQ6PCB8 327 aa13.65□□□□□ -0.23
HDAC4-208ENST00000463007 RETREG2Q8NC44 543 aa13.65□□□□□ -0.23
HDAC4-208ENST00000463007 TAF4BQ92750 862 aa13.65□□□□□ -0.23
HDAC4-208ENST00000463007 CCDC114Q96M63 670 aa13.65□□□□□ -0.23
HDAC4-208ENST00000463007 GPCPD1Q9NPB8 672 aa13.65□□□□□ -0.23
HDAC4-208ENST00000463007 SEC63Q9UGP8 760 aaKnown RBP13.65□□□□□ -0.23
HDAC4-208ENST00000463007 SLX4Q8IY92 1834 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 KRT18P05783 430 aaKnown RBP13.64□□□□□ -0.23
HDAC4-208ENST00000463007 KLHL30Q0D2K2 578 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 MAN2A1Q16706 1144 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 UBE2SQ16763 222 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 SLC9C1Q4G0N8 1177 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 FAM83BQ5T0W9 1011 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 SFMBT2Q5VUG0 894 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 HHIPL2Q6UWX4 724 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 NEK8Q86SG6 692 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 ZNF473Q8WTR7 871 aaKnown RBP13.64□□□□□ -0.23
HDAC4-208ENST00000463007 ERGIC2Q96RQ1 377 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 MYCBPQ99417 103 aaPredicted RBP13.64□□□□□ -0.23
HDAC4-208ENST00000463007 SH3GL2Q99962 352 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 DNAJC18Q9H819 358 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 SIK3Q9Y2K2 1263 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 SLC37A4O43826 429 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 CTNNA1P35221 906 aaKnown RBP13.64□□□□□ -0.23
HDAC4-208ENST00000463007 RDXP35241 583 aaKnown RBP13.64□□□□□ -0.23
HDAC4-208ENST00000463007 PAK2Q13177 524 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 CALCRLQ16602 461 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 ASPRV1Q53RT3 343 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 COL23A1Q86Y22 540 aaPredicted RBP13.64□□□□□ -0.23
HDAC4-208ENST00000463007 LARP4BQ92615 738 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms