RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 PCDHA10Q9Y5I2 948 aa14.26□□□□□ -0.13
SCLT1-202ENST00000439369 POTEMA6NI47 508 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 MBD3O95983 291 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 CCNE2O96020 404 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 INHAP05111 366 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 PSAPP07602 524 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 SMPD1P17405 629 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 RPA1P27694 616 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 ACTR2P61160 394 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 GRIN1Q05586 938 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 PRAMEF19Q5SWL8 479 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 HYIQ5T013 277 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 NCAPH2Q6IBW4 605 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 MIS18BP1Q6P0N0 1132 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 FBXO46Q6PJ61 603 aaPredicted RBP14.25□□□□□ -0.13
SCLT1-202ENST00000439369 CCDC73Q6ZRK6 1079 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 MIER3Q7Z3K6 550 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 TRPV1Q8NER1 839 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 PPTC7Q8NI37 304 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 SEPT1Q8WYJ6 367 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 SYMPKQ92797 1274 aaKnown RBP14.25□□□□□ -0.13
SCLT1-202ENST00000439369 GJA10Q969M2 543 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 DISC1Q9NRI5 854 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 CCDC39Q9UFE4 941 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 USP25Q9UHP3 1055 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 HPSEQ9Y251 543 aa14.25□□□□□ -0.13
SCLT1-202ENST00000439369 IGKV6D-21A0A0A0MT36 114 aa14.24□□□□□ -0.13
SCLT1-202ENST00000439369 NOP56O00567 594 aaKnown RBP14.24□□□□□ -0.13
SCLT1-202ENST00000439369 SUPT20HL2P0C7V6 817 aa14.24□□□□□ -0.13
SCLT1-202ENST00000439369 HOXD8P13378 290 aaPredicted RBP14.24□□□□□ -0.13
SCLT1-202ENST00000439369 ABHD15Q6UXT9 468 aa14.24□□□□□ -0.13
SCLT1-202ENST00000439369 CABP7Q86V35 215 aa14.24□□□□□ -0.13
SCLT1-202ENST00000439369 FSIP1Q8NA03 581 aa14.24□□□□□ -0.13
SCLT1-202ENST00000439369 SNX29Q8TEQ0 813 aa14.24□□□□□ -0.13
SCLT1-202ENST00000439369 ATP6V0A1Q93050 837 aa14.24□□□□□ -0.13
SCLT1-202ENST00000439369 CALML4Q96GE6 196 aa14.24□□□□□ -0.13
SCLT1-202ENST00000439369 SPATA33Q96N06 139 aa14.24□□□□□ -0.13
SCLT1-202ENST00000439369 HSD17B14Q9BPX1 270 aa14.24□□□□□ -0.13
SCLT1-202ENST00000439369 EIF2AK1Q9BQI3 630 aaKnown RBP14.24□□□□□ -0.13
SCLT1-202ENST00000439369 NT5C3AQ9H0P0 336 aa14.24□□□□□ -0.13
SCLT1-202ENST00000439369 AP5M1Q9H0R1 490 aa14.24□□□□□ -0.13
SCLT1-202ENST00000439369 UPF3AQ9H1J1 476 aaKnown RBP14.24□□□□□ -0.13
SCLT1-202ENST00000439369 CUEDC2Q9H467 287 aa14.24□□□□□ -0.13
SCLT1-202ENST00000439369 HMX1Q9NP08 348 aaPredicted RBP14.24□□□□□ -0.13
SCLT1-202ENST00000439369 EMSYQ7Z589 1322 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.23□□□□□ -0.13
SCLT1-202ENST00000439369 A6NJR5 290 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 DDX39AO00148 427 aaKnown RBP14.23□□□□□ -0.13
SCLT1-202ENST00000439369 EML1O00423 815 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 CHMP2AO43633 222 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 KPNA6O60684 536 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 PPFIA4O75335 1185 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 LYPLA2O95372 231 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 P4HBP07237 508 aaKnown RBP14.23□□□□□ -0.13
SCLT1-202ENST00000439369 RARBP10826 455 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 CCT6AP40227 531 aaKnown RBP14.23□□□□□ -0.13
SCLT1-202ENST00000439369 CPT1AP50416 773 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 SLC26A2P50443 739 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 FAM160A1Q05DH4 1040 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 TRIM32Q13049 653 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 SLC9C1Q4G0N8 1177 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 BRDTQ58F21 947 aaPredicted RBP14.23□□□□□ -0.13
SCLT1-202ENST00000439369 FAM160B1Q5W0V3 765 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 TLK2Q86UE8 772 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 OR6J1Q8NGC5 347 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 EPSTI1Q96J88 318 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 GPR20Q99678 358 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 MMTAG2Q9BU76 263 aaKnown RBP14.23□□□□□ -0.13
SCLT1-202ENST00000439369 SPC25Q9HBM1 224 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 STK17AQ9UEE5 414 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 KCNH3Q9ULD8 1083 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 SAMM50Q9Y512 469 aa14.23□□□□□ -0.13
SCLT1-202ENST00000439369 GSTTP1A0A1W2PQM5 241 aa14.22□□□□□ -0.13
SCLT1-202ENST00000439369 PP2D1A8MPX8 630 aa14.22□□□□□ -0.13
SCLT1-202ENST00000439369 GADD45BO75293 160 aaPredicted RBP14.22□□□□□ -0.13
SCLT1-202ENST00000439369 LGR5O75473 907 aa14.22□□□□□ -0.13
SCLT1-202ENST00000439369 XRCC6P12956 609 aaKnown RBP eCLIP14.22□□□□□ -0.135e-6■■□□□ 13.3
SCLT1-202ENST00000439369 PFKFB1P16118 471 aa14.22□□□□□ -0.13
SCLT1-202ENST00000439369 QARSP47897 775 aaKnown RBP14.22□□□□□ -0.13
SCLT1-202ENST00000439369 GJA9P57773 515 aa14.22□□□□□ -0.13
SCLT1-202ENST00000439369 PSMC5P62195 406 aa14.22□□□□□ -0.13
SCLT1-202ENST00000439369 SKOR2Q2VWA4 1001 aaPredicted RBP14.22□□□□□ -0.13
SCLT1-202ENST00000439369 HSDL1Q3SXM5 330 aa14.22□□□□□ -0.13
SCLT1-202ENST00000439369 TMEM119Q4V9L6 283 aa14.22□□□□□ -0.13
SCLT1-202ENST00000439369 AFAP1L1Q8TED9 768 aa14.22□□□□□ -0.13
SCLT1-202ENST00000439369 CDK5RAP3Q96JB5 506 aa14.22□□□□□ -0.13
SCLT1-202ENST00000439369 UIMC1Q96RL1 719 aa14.22□□□□□ -0.13
SCLT1-202ENST00000439369 ZSWIM4Q9H7M6 989 aa14.22□□□□□ -0.13
SCLT1-202ENST00000439369 MAGEF1Q9HAY2 307 aa14.22□□□□□ -0.13
SCLT1-202ENST00000439369 DDX20Q9UHI6 824 aaKnown RBP14.22□□□□□ -0.13
SCLT1-202ENST00000439369 IGSF9BQ9UPX0 1349 aa14.21□□□□□ -0.13
SCLT1-202ENST00000439369 ADCY6O43306 1168 aa14.21□□□□□ -0.13
SCLT1-202ENST00000439369 SLITRK3O94933 977 aa14.21□□□□□ -0.13
SCLT1-202ENST00000439369 SPATA31C1P0DKV0 1188 aa14.21□□□□□ -0.13
SCLT1-202ENST00000439369 CAPN2P17655 700 aa14.21□□□□□ -0.13
SCLT1-202ENST00000439369 CST5P28325 142 aaPredicted RBP14.21□□□□□ -0.13
SCLT1-202ENST00000439369 CNGA1P29973 690 aa14.21□□□□□ -0.13
SCLT1-202ENST00000439369 CCND3P30281 292 aaPredicted RBP14.21□□□□□ -0.13
SCLT1-202ENST00000439369 TCF7P36402 384 aaPredicted RBP14.21□□□□□ -0.13
SCLT1-202ENST00000439369 SYKP43405 635 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms