RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 DISC1Q9NRI5 854 aa13.86□□□□□ -0.19
LINC00339-204ENST00000434233 DDX20Q9UHI6 824 aaKnown RBP13.86□□□□□ -0.19
LINC00339-204ENST00000434233 PCDHA10Q9Y5I2 948 aa13.86□□□□□ -0.19
LINC00339-204ENST00000434233 A0A1W2PQ27 194 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 A0A1W2PQ64 194 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 A0A1W2PQD8 194 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 GSTTP1A0A1W2PQM5 241 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 POTEFA5A3E0 1075 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 WDR64B1ANS9 1081 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 GOLGA6L22H0YM25 854 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 EML1O00423 815 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 SLC26A4O43511 780 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 PPFIA4O75335 1185 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 CMA1P23946 247 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 GJA9P57773 515 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 ACTR2P61160 394 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 HSDL1Q3SXM5 330 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 GJC2Q5T442 439 aaPredicted RBP13.85□□□□□ -0.19
LINC00339-204ENST00000434233 NCAPH2Q6IBW4 605 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 MIS18BP1Q6P0N0 1132 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 TLK2Q86UE8 772 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 PPTC7Q8NI37 304 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 ERMNQ8TAM6 284 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 ARMC5Q96C12 935 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 SPATA33Q96N06 139 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 GPR20Q99678 358 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 CCSER1Q9C0I3 900 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 UPF3AQ9H1J1 476 aaKnown RBP13.85□□□□□ -0.19
LINC00339-204ENST00000434233 SPC25Q9HBM1 224 aa13.85□□□□□ -0.19
LINC00339-204ENST00000434233 IGKV6D-21A0A0A0MT36 114 aa13.84□□□□□ -0.19
LINC00339-204ENST00000434233 GOLGA6L4A6NEF3 574 aa13.84□□□□□ -0.19
LINC00339-204ENST00000434233 POTEMA6NI47 508 aa13.84□□□□□ -0.19
LINC00339-204ENST00000434233 A6NJR5 290 aa13.84□□□□□ -0.19
LINC00339-204ENST00000434233 NOP56O00567 594 aaKnown RBP13.84□□□□□ -0.19
LINC00339-204ENST00000434233 CHMP2AO43633 222 aa13.84□□□□□ -0.19
LINC00339-204ENST00000434233 SORBS3O60504 671 aa13.84□□□□□ -0.19
LINC00339-204ENST00000434233 PRPF40AO75400 957 aaKnown RBP13.84□□□□□ -0.19
LINC00339-204ENST00000434233 P4HBP07237 508 aaKnown RBP13.84□□□□□ -0.19
LINC00339-204ENST00000434233 PSAPP07602 524 aa13.84□□□□□ -0.19
LINC00339-204ENST00000434233 MUTP22033 750 aa13.84□□□□□ -0.19
LINC00339-204ENST00000434233 UBA7P41226 1012 aa13.84□□□□□ -0.19
LINC00339-204ENST00000434233 MAPK8IP2Q13387 824 aaPredicted RBP13.84□□□□□ -0.19
LINC00339-204ENST00000434233 BRDTQ58F21 947 aaPredicted RBP13.84□□□□□ -0.19
LINC00339-204ENST00000434233 KRT79Q5XKE5 535 aa13.84□□□□□ -0.19
LINC00339-204ENST00000434233 LHX8Q68G74 356 aa13.84□□□□□ -0.19
LINC00339-204ENST00000434233 NEK9Q8TD19 979 aa13.84□□□□□ -0.19
LINC00339-204ENST00000434233 AFG1LQ8WV93 481 aa13.84□□□□□ -0.19
LINC00339-204ENST00000434233 HSD17B14Q9BPX1 270 aa13.84□□□□□ -0.19
LINC00339-204ENST00000434233 EIF2AK1Q9BQI3 630 aaKnown RBP13.84□□□□□ -0.19
LINC00339-204ENST00000434233 POLR3CQ9BUI4 534 aaPredicted RBP13.84□□□□□ -0.19
LINC00339-204ENST00000434233 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.84□□□□□ -0.19
LINC00339-204ENST00000434233 UNC93B1Q9H1C4 597 aa13.84□□□□□ -0.19
LINC00339-204ENST00000434233 SAMM50Q9Y512 469 aa13.84□□□□□ -0.19
LINC00339-204ENST00000434233 PCNTO95613 3336 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 KPNA6O60684 536 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 DKC1O60832 514 aaKnown RBP eCLIP13.83□□□□□ -0.2
LINC00339-204ENST00000434233 SLITRK3O94933 977 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 SUPT20HL2P0C7V6 817 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 HOXD8P13378 290 aaPredicted RBP13.83□□□□□ -0.2
LINC00339-204ENST00000434233 CCL5P13501 91 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 RPA1P27694 616 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 CDC25AP30304 524 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 CPT1AP50416 773 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 SP4Q02446 784 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 MTFR1Q15390 333 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 DGKDQ16760 1214 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 SPECC1Q5M775 1068 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 RESP18Q5W5W9 173 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 HAUS3Q68CZ6 603 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 SHC4Q6S5L8 630 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 KCTD17Q8N5Z5 321 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 KLHDC9Q8NEP7 349 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 EPSTI1Q96J88 318 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 ZNF333Q96JL9 665 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 MMTAG2Q9BU76 263 aaKnown RBP13.83□□□□□ -0.2
LINC00339-204ENST00000434233 TUFT1Q9NNX1 390 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 XPNPEP3Q9NQH7 507 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 PAK6Q9NQU5 681 aaPredicted RBP13.83□□□□□ -0.2
LINC00339-204ENST00000434233 LMBRD1Q9NUN5 540 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 FAM13BQ9NYF5 915 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 TELO2Q9Y4R8 837 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 WDR81Q562E7 1941 aa13.83□□□□□ -0.2
LINC00339-204ENST00000434233 FAM237AA0A1B0GTK4 181 aa13.82□□□□□ -0.2
LINC00339-204ENST00000434233 PP2D1A8MPX8 630 aa13.82□□□□□ -0.2
LINC00339-204ENST00000434233 CTAGE5O15320 804 aa13.82□□□□□ -0.2
LINC00339-204ENST00000434233 ZEB2O60315 1214 aa13.82□□□□□ -0.2
LINC00339-204ENST00000434233 ADAMTS4O75173 837 aa13.82□□□□□ -0.2
LINC00339-204ENST00000434233 LGR5O75473 907 aa13.82□□□□□ -0.2
LINC00339-204ENST00000434233 MMP3P08254 477 aa13.82□□□□□ -0.2
LINC00339-204ENST00000434233 SPATA31C1P0DKV0 1188 aa13.82□□□□□ -0.2
LINC00339-204ENST00000434233 CAPN2P17655 700 aa13.82□□□□□ -0.2
LINC00339-204ENST00000434233 PTGS1P23219 599 aa13.82□□□□□ -0.2
LINC00339-204ENST00000434233 CST5P28325 142 aaPredicted RBP13.82□□□□□ -0.2
LINC00339-204ENST00000434233 MCM4P33991 863 aa13.82□□□□□ -0.2
LINC00339-204ENST00000434233 TCF7P36402 384 aaPredicted RBP13.82□□□□□ -0.2
LINC00339-204ENST00000434233 TXLNAP40222 546 aa13.82□□□□□ -0.2
LINC00339-204ENST00000434233 UBE2HP62256 183 aa13.82□□□□□ -0.2
LINC00339-204ENST00000434233 HYIQ5T013 277 aa13.82□□□□□ -0.2
LINC00339-204ENST00000434233 SWSAP1Q6NVH7 229 aa13.82□□□□□ -0.2
LINC00339-204ENST00000434233 USP49Q70CQ1 688 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms