RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 SPRYD3Q8NCJ5 442 aa14.08□□□□□ -0.16
USP40-205ENST00000430158 SPATA33Q96N06 139 aa14.08□□□□□ -0.16
USP40-205ENST00000430158 PCYT2Q99447 389 aa14.08□□□□□ -0.16
USP40-205ENST00000430158 RIT2Q99578 217 aa14.08□□□□□ -0.16
USP40-205ENST00000430158 NAP1L4Q99733 375 aaKnown RBP14.08□□□□□ -0.16
USP40-205ENST00000430158 ZNF577Q9BSK1 485 aa14.08□□□□□ -0.16
USP40-205ENST00000430158 C16orf70Q9BSU1 422 aa14.08□□□□□ -0.16
USP40-205ENST00000430158 TMEM60Q9H2L4 133 aa14.08□□□□□ -0.16
USP40-205ENST00000430158 SPC25Q9HBM1 224 aa14.08□□□□□ -0.16
USP40-205ENST00000430158 PKD2L1Q9P0L9 805 aa14.08□□□□□ -0.16
USP40-205ENST00000430158 KAT6AQ92794 2004 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 IGKV6D-21A0A0A0MT36 114 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 A0A1W2PQ45 241 aaPredicted RBP14.07□□□□□ -0.16
USP40-205ENST00000430158 A0A1W2PQY0 241 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 KBTBD13C9JR72 458 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 HAS3O00219 553 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 TBX3O15119 743 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 CCNT1O60563 726 aaKnown RBP14.07□□□□□ -0.16
USP40-205ENST00000430158 NUBP1P53384 320 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 SPIRE1Q08AE8 756 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 PKP1Q13835 747 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 NBR1Q14596 966 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 MCTP1Q6DN14 999 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 CXCL17Q6UXB2 119 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 SLC43A3Q8NBI5 491 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 FAM20AQ96MK3 541 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 MLXIPQ9HAP2 919 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 JPH1Q9HDC5 661 aaPredicted RBP14.07□□□□□ -0.16
USP40-205ENST00000430158 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.07□□□□□ -0.16
USP40-205ENST00000430158 TSHZ2Q9NRE2 1034 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 TBC1D22BQ9NU19 505 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 SLC9A2Q9UBY0 812 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 VAV3Q9UKW4 847 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 ZDHHC9Q9Y397 364 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 PCDHB6Q9Y5E3 794 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 PCDHB13Q9Y5F0 798 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 MYH15Q9Y2K3 1946 aa14.07□□□□□ -0.16
USP40-205ENST00000430158 TNRC18O15417 2968 aaPredicted RBP14.07□□□□□ -0.16
USP40-205ENST00000430158 VPS37CA5D8V6 355 aaPredicted RBP14.06□□□□□ -0.16
USP40-205ENST00000430158 KPNA6O60684 536 aa14.06□□□□□ -0.16
USP40-205ENST00000430158 LGR5O75473 907 aa14.06□□□□□ -0.16
USP40-205ENST00000430158 CDK7P50613 346 aa14.06□□□□□ -0.16
USP40-205ENST00000430158 ACTR2P61160 394 aa14.06□□□□□ -0.16
USP40-205ENST00000430158 ORC2Q13416 577 aaPredicted RBP14.06□□□□□ -0.16
USP40-205ENST00000430158 BECN1Q14457 450 aa14.06□□□□□ -0.16
USP40-205ENST00000430158 ZNF174Q15697 407 aa14.06□□□□□ -0.16
USP40-205ENST00000430158 DGKDQ16760 1214 aa14.06□□□□□ -0.16
USP40-205ENST00000430158 TTC38Q5R3I4 469 aa14.06□□□□□ -0.16
USP40-205ENST00000430158 C1orf53Q5VUE5 145 aa14.06□□□□□ -0.16
USP40-205ENST00000430158 ABHD15Q6UXT9 468 aa14.06□□□□□ -0.16
USP40-205ENST00000430158 BRAPQ7Z569 592 aa14.06□□□□□ -0.16
USP40-205ENST00000430158 NECAB2Q7Z6G3 386 aa14.06□□□□□ -0.16
USP40-205ENST00000430158 FERMT3Q86UX7 667 aa14.06□□□□□ -0.16
USP40-205ENST00000430158 FERMT2Q96AC1 680 aa14.06□□□□□ -0.16
USP40-205ENST00000430158 SENP6Q9GZR1 1112 aaPredicted RBP14.06□□□□□ -0.16
USP40-205ENST00000430158 C11orf49Q9H6J7 331 aa14.06□□□□□ -0.16
USP40-205ENST00000430158 POLR3EQ9NVU0 708 aa14.06□□□□□ -0.16
USP40-205ENST00000430158 ELP1O95163 1332 aa14.06□□□□□ -0.16
USP40-205ENST00000430158 ZEB2O60315 1214 aa14.05□□□□□ -0.16
USP40-205ENST00000430158 CABYRO75952 493 aa14.05□□□□□ -0.16
USP40-205ENST00000430158 F2P00734 622 aa14.05□□□□□ -0.16
USP40-205ENST00000430158 LGALS2P05162 132 aa14.05□□□□□ -0.16
USP40-205ENST00000430158 ATP2B1P20020 1258 aa14.05□□□□□ -0.16
USP40-205ENST00000430158 RILPL1Q5EBL4 403 aa14.05□□□□□ -0.16
USP40-205ENST00000430158 ZNF746Q6NUN9 644 aaPredicted RBP14.05□□□□□ -0.16
USP40-205ENST00000430158 SLC39A5Q6ZMH5 540 aa14.05□□□□□ -0.16
USP40-205ENST00000430158 SEPT1Q8WYJ6 367 aa14.05□□□□□ -0.16
USP40-205ENST00000430158 SDF4Q9BRK5 362 aa14.05□□□□□ -0.16
USP40-205ENST00000430158 MTG1Q9BT17 334 aaPredicted RBP14.05□□□□□ -0.16
USP40-205ENST00000430158 UNC45AQ9H3U1 944 aa14.05□□□□□ -0.16
USP40-205ENST00000430158 TCHHQ07283 1943 aa14.05□□□□□ -0.16
USP40-205ENST00000430158 EML1O00423 815 aa14.04□□□□□ -0.16
USP40-205ENST00000430158 NEMFO60524 1076 aa14.04□□□□□ -0.16
USP40-205ENST00000430158 HSP90AA1P07900 732 aaKnown RBP14.04□□□□□ -0.16
USP40-205ENST00000430158 MYL3P08590 195 aa14.04□□□□□ -0.16
USP40-205ENST00000430158 ZNF286BP0CG31 522 aa14.04□□□□□ -0.16
USP40-205ENST00000430158 PDIA4P13667 645 aaKnown RBP14.04□□□□□ -0.16
USP40-205ENST00000430158 MCM7P33993 719 aa14.04□□□□□ -0.16
USP40-205ENST00000430158 PSMC6P62333 389 aa14.04□□□□□ -0.16
USP40-205ENST00000430158 KRT76Q01546 638 aa14.04□□□□□ -0.16
USP40-205ENST00000430158 PPP2R5CQ13362 524 aa14.04□□□□□ -0.16
USP40-205ENST00000430158 GNL2Q13823 731 aaKnown RBP14.04□□□□□ -0.16
USP40-205ENST00000430158 LRRC26Q2I0M4 334 aa14.04□□□□□ -0.16
USP40-205ENST00000430158 BRDTQ58F21 947 aaPredicted RBP14.04□□□□□ -0.16
USP40-205ENST00000430158 LRCH2Q5VUJ6 765 aa14.04□□□□□ -0.16
USP40-205ENST00000430158 FAM173BQ6P4H8 233 aa14.04□□□□□ -0.16
USP40-205ENST00000430158 DDX39AO00148 427 aaKnown RBP14.03□□□□□ -0.16
USP40-205ENST00000430158 GAS7O60861 476 aa14.03□□□□□ -0.16
USP40-205ENST00000430158 BRD1O95696 1058 aa14.03□□□□□ -0.16
USP40-205ENST00000430158 SUPT20HL2P0C7V6 817 aa14.03□□□□□ -0.16
USP40-205ENST00000430158 ZSCAN22P10073 491 aaPredicted RBP14.03□□□□□ -0.16
USP40-205ENST00000430158 ATP4AP20648 1035 aa14.03□□□□□ -0.16
USP40-205ENST00000430158 HOXC8P31273 242 aa14.03□□□□□ -0.16
USP40-205ENST00000430158 TCF7P36402 384 aaPredicted RBP14.03□□□□□ -0.16
USP40-205ENST00000430158 SP4Q02446 784 aa14.03□□□□□ -0.16
USP40-205ENST00000430158 HIC1Q14526 733 aa14.03□□□□□ -0.16
USP40-205ENST00000430158 IL17AQ16552 155 aa14.03□□□□□ -0.16
USP40-205ENST00000430158 CALCRLQ16602 461 aa14.03□□□□□ -0.16
USP40-205ENST00000430158 NBPF20Q3BBV1 942 aa14.03□□□□□ -0.16
USP40-205ENST00000430158 TRIM50Q86XT4 487 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms