RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 ATP23Q9Y6H3 246 aa8.21□□□□□ -1.1
CCDC88A-206ENST00000430086 FAM83GA6ND36 823 aa8.2□□□□□ -1.1
CCDC88A-206ENST00000430086 GLRX3O76003 335 aaKnown RBP8.2□□□□□ -1.1
CCDC88A-206ENST00000430086 CLSTN1O94985 981 aa8.2□□□□□ -1.1
CCDC88A-206ENST00000430086 JMJD7P0C870 316 aa8.2□□□□□ -1.1
CCDC88A-206ENST00000430086 GRIN1Q05586 938 aa8.2□□□□□ -1.1
CCDC88A-206ENST00000430086 CDCA2Q69YH5 1023 aaPredicted RBP8.2□□□□□ -1.1
CCDC88A-206ENST00000430086 EP400NLQ6ZTU2 488 aa8.2□□□□□ -1.1
CCDC88A-206ENST00000430086 OTOP1Q7RTM1 612 aa8.2□□□□□ -1.1
CCDC88A-206ENST00000430086 DDX1Q92499 740 aaKnown RBP8.2□□□□□ -1.1
CCDC88A-206ENST00000430086 DACT3Q96B18 629 aaPredicted RBP8.2□□□□□ -1.1
CCDC88A-206ENST00000430086 TOX2Q96NM4 488 aa8.2□□□□□ -1.1
CCDC88A-206ENST00000430086 M0R2C6 588 aa8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 ACOT7O00154 380 aa8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 SMARCA5O60264 1052 aaPredicted RBP8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 PLA2G1BP04054 148 aaKnown RBP8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 PTPN1P18031 435 aaKnown RBP8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 ARHGAP44Q17R89 818 aa8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 CFAP100Q494V2 611 aa8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 PIK3R6Q5UE93 754 aa8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 BTBD8Q5XKL5 378 aa8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 EGFLAMQ63HQ2 1017 aa8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 NOSTRINQ8IVI9 506 aa8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 C2orf69Q8N8R5 385 aa8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 FNIP1Q8TF40 1166 aa8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 WNK4Q96J92 1243 aa8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 PWWP2AQ96N64 755 aa8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 NOX5Q96PH1 765 aa8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 GORASP1Q9BQQ3 440 aa8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 SLKQ9H2G2 1235 aaPredicted RBP8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 PMF1-BGLAPU3KQ54 211 aa8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 CADPSQ9ULU8 1353 aa8.19□□□□□ -1.1
CCDC88A-206ENST00000430086 SLC12A8A0AV02 714 aa8.18□□□□□ -1.1
CCDC88A-206ENST00000430086 FAM90A27PA6NNH2 459 aa8.18□□□□□ -1.1
CCDC88A-206ENST00000430086 YBX3P16989 372 aaKnown RBP eCLIP8.18□□□□□ -1.1
CCDC88A-206ENST00000430086 CIAPIN1Q6FI81 312 aa8.18□□□□□ -1.1
CCDC88A-206ENST00000430086 PROSER1Q86XN7 944 aa8.18□□□□□ -1.1
CCDC88A-206ENST00000430086 TMEM151BQ8IW70 566 aa8.18□□□□□ -1.1
CCDC88A-206ENST00000430086 CHST14Q8NCH0 376 aa8.18□□□□□ -1.1
CCDC88A-206ENST00000430086 KRTAP4-12Q9BQ66 201 aa8.18□□□□□ -1.1
CCDC88A-206ENST00000430086 C11orf84Q9BUA3 381 aaPredicted RBP8.18□□□□□ -1.1
CCDC88A-206ENST00000430086 CBX4O00257 560 aa8.17□□□□□ -1.1
CCDC88A-206ENST00000430086 TRAF5O00463 557 aa8.17□□□□□ -1.1
CCDC88A-206ENST00000430086 NUAK1O60285 661 aa8.17□□□□□ -1.1
CCDC88A-206ENST00000430086 CFPP27918 469 aa8.17□□□□□ -1.1
CCDC88A-206ENST00000430086 ITGA1P56199 1179 aa8.17□□□□□ -1.1
CCDC88A-206ENST00000430086 KIF18BQ86Y91 864 aa8.17□□□□□ -1.1
CCDC88A-206ENST00000430086 PPM1KQ8N3J5 372 aa8.17□□□□□ -1.1
CCDC88A-206ENST00000430086 KYQ8NBH2 561 aa8.17□□□□□ -1.1
CCDC88A-206ENST00000430086 MTFR1LQ9H019 292 aa8.17□□□□□ -1.1
CCDC88A-206ENST00000430086 CABP5Q9NP86 173 aa8.17□□□□□ -1.1
CCDC88A-206ENST00000430086 RIC8BQ9NVN3 520 aa8.17□□□□□ -1.1
CCDC88A-206ENST00000430086 A0A087X0B3 334 aa8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 KCNK3O14649 394 aa8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 C4BPAP04003 597 aaKnown RBP8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 ZBTB48P10074 688 aaPredicted RBP8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 AFF3P51826 1226 aaKnown RBP8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 CNNM4Q6P4Q7 775 aa8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 SAPCD2Q86UD0 394 aa8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 C1QL4Q86Z23 238 aa8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 KRTAP1-3Q8IUG1 177 aa8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 LRRC56Q8IYG6 542 aaPredicted RBP8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 AHI1Q8N157 1196 aa8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 TTLL6Q8N841 843 aa8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 DLG3Q92796 817 aa8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 TMEM209Q96SK2 561 aa8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 SYT3Q9BQG1 590 aa8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 TARS2Q9BW92 718 aaKnown RBP8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 BOCQ9BWV1 1114 aa8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 B4GALT6Q9UBX8 382 aa8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 WASF3Q9UPY6 502 aa8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 B3GALT1Q9Y5Z6 326 aa8.16□□□□□ -1.1
CCDC88A-206ENST00000430086 GSG1L2A8MUP6 293 aa8.15□□□□□ -1.1
CCDC88A-206ENST00000430086 NEK4P51957 841 aa8.15□□□□□ -1.1
CCDC88A-206ENST00000430086 HERVK_113P62684 666 aa8.15□□□□□ -1.1
CCDC88A-206ENST00000430086 ADAM9Q13443 819 aa8.15□□□□□ -1.1
CCDC88A-206ENST00000430086 SEC23AQ15436 765 aa8.15□□□□□ -1.1
CCDC88A-206ENST00000430086 VWA3BQ502W6 1294 aa8.15□□□□□ -1.1
CCDC88A-206ENST00000430086 CD276Q5ZPR3 534 aa8.15□□□□□ -1.1
CCDC88A-206ENST00000430086 KRTAP19-1Q8IUB9 90 aa8.15□□□□□ -1.1
CCDC88A-206ENST00000430086 ZSCAN18Q8TBC5 510 aaPredicted RBP8.15□□□□□ -1.1
CCDC88A-206ENST00000430086 ZBTB8AQ96BR9 441 aa8.15□□□□□ -1.1
CCDC88A-206ENST00000430086 IRF2BPLQ9H1B7 796 aa8.15□□□□□ -1.1
CCDC88A-206ENST00000430086 KCNH7Q9NS40 1196 aa8.15□□□□□ -1.1
CCDC88A-206ENST00000430086 IRF9Q00978 393 aa8.14□□□□□ -1.11
CCDC88A-206ENST00000430086 DLX2Q07687 328 aaPredicted RBP8.14□□□□□ -1.11
CCDC88A-206ENST00000430086 TCERG1LQ5VWI1 586 aa8.14□□□□□ -1.11
CCDC88A-206ENST00000430086 VASNQ6EMK4 673 aa8.14□□□□□ -1.11
CCDC88A-206ENST00000430086 FSTL4Q6MZW2 842 aa8.14□□□□□ -1.11
CCDC88A-206ENST00000430086 DTX3Q8N9I9 347 aa8.14□□□□□ -1.11
CCDC88A-206ENST00000430086 TMX1Q9H3N1 280 aa8.14□□□□□ -1.11
CCDC88A-206ENST00000430086 SPATA6Q9NWH7 488 aaPredicted RBP8.14□□□□□ -1.11
CCDC88A-206ENST00000430086 MAPRE3Q9UPY8 281 aa8.14□□□□□ -1.11
CCDC88A-206ENST00000430086 PTPDC1A2A3K4 754 aa8.13□□□□□ -1.11
CCDC88A-206ENST00000430086 SH3D21A4FU49 640 aa8.13□□□□□ -1.11
CCDC88A-206ENST00000430086 SCDO00767 359 aa8.13□□□□□ -1.11
CCDC88A-206ENST00000430086 KPNA6O60684 536 aa8.13□□□□□ -1.11
CCDC88A-206ENST00000430086 ENO2P09104 434 aaPredicted RBP8.13□□□□□ -1.11
CCDC88A-206ENST00000430086 MYCLP1P12525 358 aaPredicted RBP8.13□□□□□ -1.11
CCDC88A-206ENST00000430086 THBS2P35442 1172 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms