RNA–Protein interactions for RNA: ENST00000418882.2

HMGB1P49-201, Transcript of high mobility group box 1 pseudogene 49, humanhuman

BASIC

Gene HMGB1P49, Length 569 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P49-201ENST00000418882 TMC5Q6UXY8 1006 aa6.64□□□□□ -1.35
HMGB1P49-201ENST00000418882 C16orf86Q6ZW13 317 aa6.64□□□□□ -1.35
HMGB1P49-201ENST00000418882 ZSWIM3Q96MP5 696 aa6.64□□□□□ -1.35
HMGB1P49-201ENST00000418882 YIPF4Q9BSR8 244 aa6.64□□□□□ -1.35
HMGB1P49-201ENST00000418882 PDGFDQ9GZP0 370 aaPredicted RBP6.64□□□□□ -1.35
HMGB1P49-201ENST00000418882 MAFKO60675 156 aa6.63□□□□□ -1.35
HMGB1P49-201ENST00000418882 RFPL3O75679 317 aa6.63□□□□□ -1.35
HMGB1P49-201ENST00000418882 FAHP16930 419 aa6.63□□□□□ -1.35
HMGB1P49-201ENST00000418882 MECP2P51608 486 aaKnown RBP6.63□□□□□ -1.35
HMGB1P49-201ENST00000418882 ST5P78524 1137 aa6.63□□□□□ -1.35
HMGB1P49-201ENST00000418882 TMEM177Q53S58 311 aa6.63□□□□□ -1.35
HMGB1P49-201ENST00000418882 CPZQ66K79 652 aa6.63□□□□□ -1.35
HMGB1P49-201ENST00000418882 ZC3H18Q86VM9 953 aaKnown RBP6.63□□□□□ -1.35
HMGB1P49-201ENST00000418882 NOSTRINQ8IVI9 506 aa6.63□□□□□ -1.35
HMGB1P49-201ENST00000418882 ENPP3O14638 875 aa6.62□□□□□ -1.35
HMGB1P49-201ENST00000418882 PTPN1P18031 435 aaKnown RBP6.62□□□□□ -1.35
HMGB1P49-201ENST00000418882 NKX3-2P78367 333 aa6.62□□□□□ -1.35
HMGB1P49-201ENST00000418882 TCEA2Q15560 299 aa6.62□□□□□ -1.35
HMGB1P49-201ENST00000418882 CRY1Q16526 586 aa6.62□□□□□ -1.35
HMGB1P49-201ENST00000418882 FAM47CQ5HY64 1035 aa6.62□□□□□ -1.35
HMGB1P49-201ENST00000418882 FIGNQ5HY92 759 aa6.62□□□□□ -1.35
HMGB1P49-201ENST00000418882 TCERG1LQ5VWI1 586 aa6.62□□□□□ -1.35
HMGB1P49-201ENST00000418882 ZCCHC8Q6NZY4 707 aaKnown RBP6.62□□□□□ -1.35
HMGB1P49-201ENST00000418882 KIAA0907Q7Z7F0 614 aaPredicted RBP6.62□□□□□ -1.35
HMGB1P49-201ENST00000418882 TRIM48Q8IWZ4 208 aa6.62□□□□□ -1.35
HMGB1P49-201ENST00000418882 LINC01356Q8N9X3 169 aa6.62□□□□□ -1.35
HMGB1P49-201ENST00000418882 ZSCAN18Q8TBC5 510 aaPredicted RBP6.62□□□□□ -1.35
HMGB1P49-201ENST00000418882 HSPBP1Q9NZL4 362 aa6.62□□□□□ -1.35
HMGB1P49-201ENST00000418882 ARID1BQ8NFD5 2236 aaPredicted RBP6.61□□□□□ -1.35
HMGB1P49-201ENST00000418882 TLDC2A0PJX2 215 aa6.61□□□□□ -1.35
HMGB1P49-201ENST00000418882 M0R2C6 588 aa6.61□□□□□ -1.35
HMGB1P49-201ENST00000418882 OPA1O60313 960 aa6.61□□□□□ -1.35
HMGB1P49-201ENST00000418882 C4BPAP04003 597 aaKnown RBP6.61□□□□□ -1.35
HMGB1P49-201ENST00000418882 ASLP04424 464 aa6.61□□□□□ -1.35
HMGB1P49-201ENST00000418882 IGFALSP35858 605 aa6.61□□□□□ -1.35
HMGB1P49-201ENST00000418882 CAP1Q01518 475 aa6.61□□□□□ -1.35
HMGB1P49-201ENST00000418882 FZD5Q13467 585 aa6.61□□□□□ -1.35
HMGB1P49-201ENST00000418882 DALRD3Q5D0E6 543 aaKnown RBP6.61□□□□□ -1.35
HMGB1P49-201ENST00000418882 PRR31Q5SQ13 230 aa6.61□□□□□ -1.35
HMGB1P49-201ENST00000418882 CD276Q5ZPR3 534 aa6.61□□□□□ -1.35
HMGB1P49-201ENST00000418882 HHIPL2Q6UWX4 724 aa6.61□□□□□ -1.35
HMGB1P49-201ENST00000418882 KYQ8NBH2 561 aa6.61□□□□□ -1.35
HMGB1P49-201ENST00000418882 SYT8Q8NBV8 401 aa6.61□□□□□ -1.35
HMGB1P49-201ENST00000418882 SAMD15Q9P1V8 674 aa6.61□□□□□ -1.35
HMGB1P49-201ENST00000418882 SH3D21A4FU49 640 aa6.6□□□□□ -1.35
HMGB1P49-201ENST00000418882 TRAF5O00463 557 aa6.6□□□□□ -1.35
HMGB1P49-201ENST00000418882 BTBD8Q5XKL5 378 aa6.6□□□□□ -1.35
HMGB1P49-201ENST00000418882 TMEM151BQ8IW70 566 aa6.6□□□□□ -1.35
HMGB1P49-201ENST00000418882 DHX37Q8IY37 1157 aaKnown RBP6.6□□□□□ -1.35
HMGB1P49-201ENST00000418882 SYNPOQ8N3V7 929 aa6.6□□□□□ -1.35
HMGB1P49-201ENST00000418882 NINJ1Q92982 152 aa6.6□□□□□ -1.35
HMGB1P49-201ENST00000418882 KRTAP9-9Q9BYP9 154 aa6.6□□□□□ -1.35
HMGB1P49-201ENST00000418882 KRTAP9-4Q9BYQ2 154 aa6.6□□□□□ -1.35
HMGB1P49-201ENST00000418882 ATP23Q9Y6H3 246 aa6.6□□□□□ -1.35
HMGB1P49-201ENST00000418882 SCDO00767 359 aa6.59□□□□□ -1.35
HMGB1P49-201ENST00000418882 JMJD7P0C870 316 aa6.59□□□□□ -1.35
HMGB1P49-201ENST00000418882 ZBTB48P10074 688 aaPredicted RBP6.59□□□□□ -1.35
HMGB1P49-201ENST00000418882 PIK3R6Q5UE93 754 aa6.59□□□□□ -1.35
HMGB1P49-201ENST00000418882 DTX3Q8N9I9 347 aa6.59□□□□□ -1.35
HMGB1P49-201ENST00000418882 FEZ1Q99689 392 aa6.59□□□□□ -1.35
HMGB1P49-201ENST00000418882 SPATA25Q9BR10 227 aa6.59□□□□□ -1.35
HMGB1P49-201ENST00000418882 SLC39A2Q9NP94 309 aa6.59□□□□□ -1.35
HMGB1P49-201ENST00000418882 RIC8BQ9NVN3 520 aa6.59□□□□□ -1.35
HMGB1P49-201ENST00000418882 RASSF10A6NK89 507 aa6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 GSTA4O15217 222 aa6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 CLASP2O75122 1294 aaKnown RBP6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 SLURP1P55000 103 aa6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 MLLT6P55198 1093 aaPredicted RBP6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 PFKPQ01813 784 aa6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 SKOR2Q2VWA4 1001 aaPredicted RBP6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 PLEKHG4Q58EX7 1191 aa6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 CDCA2Q69YH5 1023 aaPredicted RBP6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 SDE2Q6IQ49 451 aa6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 OTOP1Q7RTM1 612 aa6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 SIAH1Q8IUQ4 282 aa6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 NIM1KQ8IY84 436 aa6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 NLGN4XQ8N0W4 816 aa6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 CARFQ8N187 725 aa6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 MARCH10Q8NA82 808 aaPredicted RBP6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 ZCCHC14Q8WYQ9 949 aaKnown RBP6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 KCNC2Q96PR1 638 aa6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 MTFR1LQ9H019 292 aa6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 NGRNQ9NPE2 291 aaKnown RBP6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 MAGEC2Q9UBF1 373 aaPredicted RBP6.58□□□□□ -1.36
HMGB1P49-201ENST00000418882 ZNF839A8K0R7 811 aa6.57□□□□□ -1.36
HMGB1P49-201ENST00000418882 CBX4O00257 560 aa6.57□□□□□ -1.36
HMGB1P49-201ENST00000418882 DVL2O14641 736 aa6.57□□□□□ -1.36
HMGB1P49-201ENST00000418882 IL18BPO95998 194 aa6.57□□□□□ -1.36
HMGB1P49-201ENST00000418882 COL6A1P12109 1028 aa6.57□□□□□ -1.36
HMGB1P49-201ENST00000418882 BMP7P18075 431 aa6.57□□□□□ -1.36
HMGB1P49-201ENST00000418882 MC4RP32245 332 aa6.57□□□□□ -1.36
HMGB1P49-201ENST00000418882 DBPQ10586 325 aaPredicted RBP6.57□□□□□ -1.36
HMGB1P49-201ENST00000418882 SKIDA1Q1XH10 827 aa6.57□□□□□ -1.36
HMGB1P49-201ENST00000418882 KRTAP19-4Q3LI73 84 aa6.57□□□□□ -1.36
HMGB1P49-201ENST00000418882 CREB3L3Q68CJ9 461 aa6.57□□□□□ -1.36
HMGB1P49-201ENST00000418882 LRRTM3Q86VH5 581 aa6.57□□□□□ -1.36
HMGB1P49-201ENST00000418882 TTLL6Q8N841 843 aa6.57□□□□□ -1.36
HMGB1P49-201ENST00000418882 DLG3Q92796 817 aa6.57□□□□□ -1.36
HMGB1P49-201ENST00000418882 TARS2Q9BW92 718 aaKnown RBP6.57□□□□□ -1.36
HMGB1P49-201ENST00000418882 BTBD7Q9P203 1132 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms