RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 KCNA2P16389 499 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 SMARCA1P28370 1054 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 ERVK-21P61565 698 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 TMTC2Q8N394 836 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 BRPF3Q9ULD4 1205 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 PCDHA6Q9UN73 950 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 PCDHA8Q9Y5H6 950 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 EMSYQ7Z589 1322 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 EFCAB14O75071 495 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 CALM1P0DP23 149 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 CALM2P0DP24 149 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 CALM3P0DP25 149 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 LIFRP42702 1097 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 IGBP1P78318 339 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 ADAM17P78536 824 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 ADCK5Q3MIX3 580 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 WWC2Q6AWC2 1192 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 TYW1BQ6NUM6 668 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 RASEFQ8IZ41 740 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 CYP2W1Q8TAV3 490 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 SEPT8Q92599 483 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 HLA-CQ95604 372 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 SENP7Q9BQF6 1050 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 ZNF215Q9UL58 517 aaPredicted RBP13.29□□□□□ -0.28
USP4-204ENST00000416417 UBIAD1Q9Y5Z9 338 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 CHRNA1P02708 482 aa13.28□□□□□ -0.28
USP4-204ENST00000416417 GHRP10912 638 aa13.28□□□□□ -0.28
USP4-204ENST00000416417 GNAT1P11488 350 aa13.28□□□□□ -0.28
USP4-204ENST00000416417 CPA1P15085 419 aa13.28□□□□□ -0.28
USP4-204ENST00000416417 MTMR1Q13613 665 aa13.28□□□□□ -0.28
USP4-204ENST00000416417 XRRA1Q6P2D8 792 aa13.28□□□□□ -0.28
USP4-204ENST00000416417 FBXO22Q8NEZ5 403 aa13.28□□□□□ -0.28
USP4-204ENST00000416417 GPRASP2Q96D09 838 aa13.28□□□□□ -0.28
USP4-204ENST00000416417 UIMC1Q96RL1 719 aa13.28□□□□□ -0.28
USP4-204ENST00000416417 MTA3Q9BTC8 594 aa13.28□□□□□ -0.28
USP4-204ENST00000416417 TMEM260Q9NX78 707 aa13.28□□□□□ -0.28
USP4-204ENST00000416417 INSL6Q9Y581 213 aa13.28□□□□□ -0.28
USP4-204ENST00000416417 CNTNAP5Q8WYK1 1306 aa13.27□□□□□ -0.28
USP4-204ENST00000416417 SPDYE3A6NKU9 549 aa13.27□□□□□ -0.29
USP4-204ENST00000416417 COL9A1P20849 921 aa13.27□□□□□ -0.29
USP4-204ENST00000416417 HTRA4P83105 476 aaPredicted RBP13.27□□□□□ -0.29
USP4-204ENST00000416417 PPFIA1Q13136 1202 aa13.27□□□□□ -0.29
USP4-204ENST00000416417 AAK1Q2M2I8 961 aa13.27□□□□□ -0.29
USP4-204ENST00000416417 APOA5Q6Q788 366 aa13.27□□□□□ -0.29
USP4-204ENST00000416417 DNAJB3Q8WWF6 145 aa13.27□□□□□ -0.29
USP4-204ENST00000416417 SEPT1Q8WYJ6 367 aa13.27□□□□□ -0.29
USP4-204ENST00000416417 GLG1Q92896 1179 aa13.27□□□□□ -0.29
USP4-204ENST00000416417 NEK1Q96PY6 1258 aa13.27□□□□□ -0.29
USP4-204ENST00000416417 YME1L1Q96TA2 773 aa13.27□□□□□ -0.29
USP4-204ENST00000416417 PCYT2Q99447 389 aa13.27□□□□□ -0.29
USP4-204ENST00000416417 JADE2Q9NQC1 790 aa13.27□□□□□ -0.29
USP4-204ENST00000416417 NAP1L2Q9ULW6 460 aaPredicted RBP13.27□□□□□ -0.29
USP4-204ENST00000416417 ARP10275 920 aa13.26□□□□□ -0.29
USP4-204ENST00000416417 NAPAP54920 295 aa13.26□□□□□ -0.29
USP4-204ENST00000416417 EXOSC10Q01780 885 aaKnown RBP13.26□□□□□ -0.29
USP4-204ENST00000416417 GRIK4Q16099 956 aa13.26□□□□□ -0.29
USP4-204ENST00000416417 MARCH8Q5T0T0 291 aa13.26□□□□□ -0.29
USP4-204ENST00000416417 SYNE3Q6ZMZ3 975 aa13.26□□□□□ -0.29
USP4-204ENST00000416417 SGMS1Q86VZ5 419 aa13.26□□□□□ -0.29
USP4-204ENST00000416417 TRAPPC12Q8WVT3 735 aa13.26□□□□□ -0.29
USP4-204ENST00000416417 TOP1MTQ969P6 601 aa13.26□□□□□ -0.29
USP4-204ENST00000416417 IFIH1Q9BYX4 1025 aaKnown RBP13.26□□□□□ -0.29
USP4-204ENST00000416417 FAM49AQ9H0Q0 323 aaPredicted RBP13.26□□□□□ -0.29
USP4-204ENST00000416417 COG5Q9UP83 839 aa13.26□□□□□ -0.29
USP4-204ENST00000416417 V9GY48 417 aaPredicted RBP13.26□□□□□ -0.29
USP4-204ENST00000416417 NRCAMQ92823 1304 aa13.26□□□□□ -0.29
USP4-204ENST00000416417 MICAL3Q7RTP6 2002 aa13.26□□□□□ -0.29
USP4-204ENST00000416417 ADAMTS3O15072 1205 aa13.25□□□□□ -0.29
USP4-204ENST00000416417 CSPG5O95196 566 aa13.25□□□□□ -0.29
USP4-204ENST00000416417 CDC27P30260 824 aa13.25□□□□□ -0.29
USP4-204ENST00000416417 MGAT3Q09327 533 aa13.25□□□□□ -0.29
USP4-204ENST00000416417 TMEM62Q0P6H9 643 aa13.25□□□□□ -0.29
USP4-204ENST00000416417 FUT2Q10981 343 aa13.25□□□□□ -0.29
USP4-204ENST00000416417 LPIN1Q14693 890 aa13.25□□□□□ -0.29
USP4-204ENST00000416417 RTN1Q16799 776 aa13.25□□□□□ -0.29
USP4-204ENST00000416417 EPC2Q52LR7 807 aa13.25□□□□□ -0.29
USP4-204ENST00000416417 FAM26DQ5JW98 314 aa13.25□□□□□ -0.29
USP4-204ENST00000416417 GIMAP8Q8ND71 665 aaPredicted RBP13.25□□□□□ -0.29
USP4-204ENST00000416417 SP7Q8TDD2 431 aaPredicted RBP13.25□□□□□ -0.29
USP4-204ENST00000416417 KHSRPQ92945 711 aaKnown RBP eCLIP13.25□□□□□ -0.29
USP4-204ENST00000416417 TUBE1Q9UJT0 475 aa13.25□□□□□ -0.29
USP4-204ENST00000416417 KLF18A0A0U1RQI7 1052 aa13.24□□□□□ -0.29
USP4-204ENST00000416417 GOLGA8AA7E2F4 631 aa13.24□□□□□ -0.29
USP4-204ENST00000416417 GOLGA8BA8MQT2 603 aa13.24□□□□□ -0.29
USP4-204ENST00000416417 DDX39AO00148 427 aaKnown RBP13.24□□□□□ -0.29
USP4-204ENST00000416417 STXBP3O00186 592 aa13.24□□□□□ -0.29
USP4-204ENST00000416417 ZBTB43O43298 467 aa13.24□□□□□ -0.29
USP4-204ENST00000416417 PPFIA3O75145 1194 aa13.24□□□□□ -0.29
USP4-204ENST00000416417 CAND2O75155 1236 aa13.24□□□□□ -0.29
USP4-204ENST00000416417 BMP2KLQ5H9B9 411 aa13.24□□□□□ -0.29
USP4-204ENST00000416417 CDHR1Q96JP9 859 aa13.24□□□□□ -0.29
USP4-204ENST00000416417 MXRA8Q9BRK3 442 aa13.24□□□□□ -0.29
USP4-204ENST00000416417 KCNH7Q9NS40 1196 aa13.24□□□□□ -0.29
USP4-204ENST00000416417 FAM217BQ9NTX9 383 aaPredicted RBP13.24□□□□□ -0.29
USP4-204ENST00000416417 ERAP1Q9NZ08 941 aa13.24□□□□□ -0.29
USP4-204ENST00000416417 LMCD1Q9NZU5 365 aa13.24□□□□□ -0.29
USP4-204ENST00000416417 CDY2AQ9Y6F7 541 aa13.24□□□□□ -0.29
USP4-204ENST00000416417 SIP14410 1827 aa13.24□□□□□ -0.29
USP4-204ENST00000416417 INSRRP14616 1297 aa13.23□□□□□ -0.29
USP4-204ENST00000416417 IBSPP21815 317 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms