RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.77□□□□□ -0.69
CD44-206ENST00000415148 BZW2Q9Y6E2 419 aaKnown RBP10.77□□□□□ -0.69
CD44-206ENST00000415148 SHTN1A0MZ66 631 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 TLR2O60603 784 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 NAP1L1P55209 391 aaKnown RBP10.76□□□□□ -0.69
CD44-206ENST00000415148 KCNQ4P56696 695 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 IRX3P78415 501 aaPredicted RBP10.76□□□□□ -0.69
CD44-206ENST00000415148 GABPAQ06546 454 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 NFIXQ14938 502 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 MMS22LQ6ZRQ5 1243 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 CCDC24Q8N4L8 307 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 WHAMMQ8TF30 809 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 CCDC43Q96MW1 224 aaKnown RBP10.76□□□□□ -0.69
CD44-206ENST00000415148 PITPNM2Q9BZ72 1349 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 LOC102724159A0A0B4J2E5 919 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 ZEB2O60315 1214 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 PALMO75781 387 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 FTCDO95954 541 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 USP11P51784 963 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 SEC24CP53992 1094 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 GPSM2P81274 684 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 ZNF543Q08ER8 600 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 PWP2Q15269 919 aaKnown RBP10.76□□□□□ -0.69
CD44-206ENST00000415148 CDC37Q16543 378 aaPredicted RBP10.76□□□□□ -0.69
CD44-206ENST00000415148 ECM1Q16610 540 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 IFI16Q16666 785 aaKnown RBP10.76□□□□□ -0.69
CD44-206ENST00000415148 PTPROQ16827 1216 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 GPATCH4Q5T3I0 446 aaKnown RBP10.76□□□□□ -0.69
CD44-206ENST00000415148 SPATS2Q86XZ4 545 aaKnown RBP10.76□□□□□ -0.69
CD44-206ENST00000415148 IFT81Q8WYA0 676 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 LSM14BQ9BX40 385 aaKnown RBP10.76□□□□□ -0.69
CD44-206ENST00000415148 KCTD10Q9H3F6 313 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 JMJD4Q9H9V9 463 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 NLRC4Q9NPP4 1024 aa10.76□□□□□ -0.69
CD44-206ENST00000415148 FRMPD2Q68DX3 1309 aaPredicted RBP10.76□□□□□ -0.69
CD44-206ENST00000415148 FRMD3A2A2Y4 597 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 MARCH6O60337 910 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 TTLL1O95922 423 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 ANXA13P27216 316 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 TNNI2P48788 182 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 POLR2FP61218 127 aaKnown RBP10.75□□□□□ -0.69
CD44-206ENST00000415148 ADGRF4Q8IZF3 695 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 CASKIN2Q8WXE0 1202 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 TBC1D5Q92609 795 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 GJA10Q969M2 543 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 PLCB1Q9NQ66 1216 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 EMILIN3Q9NT22 766 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 GGA1Q9UJY5 639 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 ATF5Q9Y2D1 282 aaPredicted RBP10.75□□□□□ -0.69
CD44-206ENST00000415148 CYP3A7-CYP3A51PA0A087WV96 503 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 CYP3A7P24462 503 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 FNTAP49354 379 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 TNNC1P63316 161 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 GUCY2DQ02846 1103 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 KLHL30Q0D2K2 578 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 ASIC2Q16515 512 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 CFAP58Q5T655 872 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 MCTP2Q6DN12 878 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 PBKQ96KB5 322 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 INPP4AQ96PE3 977 aaPredicted RBP10.75□□□□□ -0.69
CD44-206ENST00000415148 UIMC1Q96RL1 719 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 PACSIN1Q9BY11 444 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 FGFBP2Q9BYJ0 223 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 GOLPH3Q9H4A6 298 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 EPB41L5Q9HCM4 733 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 TMEM59LQ9UK28 342 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 SUGT1Q9Y2Z0 365 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 STK24Q9Y6E0 443 aa10.75□□□□□ -0.69
CD44-206ENST00000415148 ATXN2Q99700 1313 aaKnown RBP10.74□□□□□ -0.69
CD44-206ENST00000415148 SRRM3A6NNA2 597 aaPredicted RBP10.74□□□□□ -0.69
CD44-206ENST00000415148 UBAP1LF5GYI3 381 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 ZBTB5O15062 677 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 CETN3O15182 167 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 UFL1O94874 794 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 HEXIM1O94992 359 aaKnown RBP10.74□□□□□ -0.69
CD44-206ENST00000415148 PLA2G4BP0C869 781 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 MYBP10242 640 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 KLRC1P26715 233 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 RFC4P35249 363 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 ADAM9Q13443 819 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 ENOX2Q16206 610 aaKnown RBP10.74□□□□□ -0.69
CD44-206ENST00000415148 KIAA0753Q2KHM9 967 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 MFSD14BQ5SR56 506 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 MOXD1Q6UVY6 613 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 KDM7AQ6ZMT4 941 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 B4GALNT4Q76KP1 1039 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 FRMD5Q7Z6J6 570 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 SUGP1Q8IWZ8 645 aaKnown RBP10.74□□□□□ -0.69
CD44-206ENST00000415148 SLFN12Q8IYM2 578 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 CNBD1Q8NA66 436 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 RPGRQ92834 1020 aaKnown RBP10.74□□□□□ -0.69
CD44-206ENST00000415148 GANQ9H2C0 597 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 LRRC4CQ9HCJ2 640 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 CAPN7Q9Y6W3 813 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 KIF13BQ9NQT8 1826 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 A0A087X0T9 212 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 NDUFAB1O14561 156 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 BBOX1O75936 387 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 FAM228BP0C875 321 aa10.74□□□□□ -0.69
CD44-206ENST00000415148 INPP5BP32019 993 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms