RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, humanhuman

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-205ENST00000409810 EMSYQ7Z589 1322 aa12.36□□□□□ -0.43
CHMP3-205ENST00000409810 DDX39AO00148 427 aaKnown RBP12.35□□□□□ -0.43
CHMP3-205ENST00000409810 TDP2O95551 362 aa12.35□□□□□ -0.43
CHMP3-205ENST00000409810 GNAT1P11488 350 aa12.35□□□□□ -0.43
CHMP3-205ENST00000409810 ACTR2P61160 394 aa12.35□□□□□ -0.43
CHMP3-205ENST00000409810 NR5A1Q13285 461 aa12.35□□□□□ -0.43
CHMP3-205ENST00000409810 PPP4R3AQ6IN85 833 aa12.35□□□□□ -0.43
CHMP3-205ENST00000409810 ZNF746Q6NUN9 644 aaPredicted RBP12.35□□□□□ -0.43
CHMP3-205ENST00000409810 MIS18BP1Q6P0N0 1132 aa12.35□□□□□ -0.43
CHMP3-205ENST00000409810 SMAP1Q8IYB5 467 aaPredicted RBP12.35□□□□□ -0.43
CHMP3-205ENST00000409810 CCDC155Q8N6L0 562 aa12.35□□□□□ -0.43
CHMP3-205ENST00000409810 FBXO18Q8NFZ0 1043 aa12.35□□□□□ -0.43
CHMP3-205ENST00000409810 GLG1Q92896 1179 aa12.35□□□□□ -0.43
CHMP3-205ENST00000409810 LENG9Q96B70 501 aa12.35□□□□□ -0.43
CHMP3-205ENST00000409810 TEKT3Q9BXF9 490 aa12.35□□□□□ -0.43
CHMP3-205ENST00000409810 SMARCAD1Q9H4L7 1026 aa12.35□□□□□ -0.43
CHMP3-205ENST00000409810 TRMT13Q9NUP7 481 aaKnown RBP12.35□□□□□ -0.43
CHMP3-205ENST00000409810 ERAP1Q9NZ08 941 aa12.35□□□□□ -0.43
CHMP3-205ENST00000409810 GTF2IRD1Q9UHL9 959 aa12.35□□□□□ -0.43
CHMP3-205ENST00000409810 TBX21Q9UL17 535 aa12.35□□□□□ -0.43
CHMP3-205ENST00000409810 SMC3Q9UQE7 1217 aa12.35□□□□□ -0.43
CHMP3-205ENST00000409810 GSTTP1A0A1W2PQM5 241 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 TRIM43BA6NCK2 446 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 BTBD18B2RXH4 712 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 MSH4O15457 936 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 CCNT1O60563 726 aaKnown RBP12.34□□□□□ -0.43
CHMP3-205ENST00000409810 GAS7O60861 476 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 LGR5O75473 907 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 TIMP1P01033 207 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 BMP8BP34820 402 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 MAGEA10P43363 369 aaPredicted RBP12.34□□□□□ -0.43
CHMP3-205ENST00000409810 MDM2Q00987 491 aaPredicted RBP12.34□□□□□ -0.43
CHMP3-205ENST00000409810 GUCY1B3Q02153 619 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 PTGISQ16647 500 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 LRCH2Q5VUJ6 765 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 FAM160B1Q5W0V3 765 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 CHRDL2Q6WN34 429 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 SH3RF1Q7Z6J0 888 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 TNFRSF25Q93038 417 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 TRIM43Q96BQ3 446 aaPredicted RBP12.34□□□□□ -0.43
CHMP3-205ENST00000409810 MBOAT7Q96N66 472 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 RIT2Q99578 217 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 TRPV6Q9H1D0 765 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 FOXP1Q9H334 677 aaPredicted RBP12.34□□□□□ -0.43
CHMP3-205ENST00000409810 HIPK3Q9H422 1215 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 HDAC6Q9UBN7 1215 aa12.34□□□□□ -0.43
CHMP3-205ENST00000409810 C17orf102A2RUQ5 167 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 WDR64B1ANS9 1081 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 H3BQV1 296 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 BACH1O14867 736 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 DHX15O43143 795 aaKnown RBP12.33□□□□□ -0.44
CHMP3-205ENST00000409810 MARCH6O60337 910 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 ATG7O95352 703 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 BAG4O95429 457 aaKnown RBP12.33□□□□□ -0.44
CHMP3-205ENST00000409810 PSAPP07602 524 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 SMIM10L2AP0DMW4 78 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 SMIM10L2BP0DMW5 78 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 GJB2P29033 226 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 SFNP31947 248 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 SLC26A2P50443 739 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 JAK3P52333 1124 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 BFSP2Q13515 415 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 GDF6Q6KF10 455 aaPredicted RBP12.33□□□□□ -0.44
CHMP3-205ENST00000409810 TRIM50Q86XT4 487 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 TMEM199Q8N511 208 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 CAGE1Q8TC20 777 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 SLC5A5Q92911 643 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 BADQ92934 168 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 FAM20AQ96MK3 541 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 GDF15Q99988 308 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 PPP1R12CQ9BZL4 782 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 UBE2OQ9C0C9 1292 aaKnown RBP12.33□□□□□ -0.44
CHMP3-205ENST00000409810 SAMM50Q9Y512 469 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 NRCAMQ92823 1304 aa12.33□□□□□ -0.44
CHMP3-205ENST00000409810 A0A1W2PPC1 479 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 K7ELQ4 463 aaPredicted RBP12.32□□□□□ -0.44
CHMP3-205ENST00000409810 PITPNM1O00562 1244 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 TBX3O15119 743 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 EDIL3O43854 480 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 MARK3P27448 753 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 STAT5BP51692 787 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 FPGSQ05932 587 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 PPIGQ13427 754 aaKnown RBP eCLIP12.32□□□□□ -0.447e-11■■□□□ 12.6
CHMP3-205ENST00000409810 CUL4AQ13619 759 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 MFSD5Q6N075 450 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 PLPPR4Q7Z2D5 763 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 HSCBQ8IWL3 235 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 SLFN12Q8IYM2 578 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 RDM1Q8NG50 284 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 AFAP1L1Q8TED9 768 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 SNX21Q969T3 373 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 ZNF302Q9NR11 478 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 NOL7Q9UMY1 257 aaKnown RBP12.32□□□□□ -0.44
CHMP3-205ENST00000409810 PCDHA10Q9Y5I2 948 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 TRIOBPQ9H2D6 2365 aa12.32□□□□□ -0.44
CHMP3-205ENST00000409810 SLC37A4O43826 429 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 CCNE2O96020 404 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 CYP2C9P11712 490 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 TRAPPC10P48553 1259 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 PPFIA1Q13136 1202 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms