RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 PTGDRQ13258 359 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 TRPC7Q9HCX4 862 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 ZNF541Q9H0D2 1346 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 WDR64B1ANS9 1081 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 GGPS1O95749 300 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 ALDH3A1P30838 453 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 CAP2P40123 477 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 ARMCX2Q7L311 632 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 SKA1Q96BD8 255 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 PIGSQ96S52 555 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 PLVAPQ9BX97 442 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 VCPKMTQ9H867 229 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 DBR1Q9UK59 544 aaKnown RBP7.97□□□□□ -1.13
SCN9A-202ENST00000409435 VWA3AA6NCI4 1184 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 NCAM2O15394 837 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 IGSF3O75054 1194 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 ADD2P35612 726 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 GJC2Q5T442 439 aaPredicted RBP7.96□□□□□ -1.13
SCN9A-202ENST00000409435 FIBCD1Q8N539 461 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 FBXO22Q8NEZ5 403 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 TBC1D22BQ9NU19 505 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 EHD2Q9NZN4 543 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 MAP10Q9P2G4 905 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 THEGQ9P2T0 379 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 MOCS3O95396 460 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 GJB2P29033 226 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 SLC8A1P32418 973 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 OR1G1P47890 313 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 ST8SIA6P61647 398 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 SPRYD7Q5W111 196 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 C4orf50Q6ZRC1 276 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 LCA5Q86VQ0 697 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 RHPN2Q8IUC4 686 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 RNF10Q8N5U6 811 aaKnown RBP7.96□□□□□ -1.13
SCN9A-202ENST00000409435 PCDHB9Q9Y5E1 797 aa7.96□□□□□ -1.13
SCN9A-202ENST00000409435 REREQ9P2R6 1566 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 LRRD1A4D1F6 860 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 BNIP3LO60238 219 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 GNG11P61952 73 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 KRT33BQ14525 404 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 SLC10A5Q5PT55 438 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 PSPC1Q8WXF1 523 aaKnown RBP7.96□□□□□ -1.14
SCN9A-202ENST00000409435 DHX58Q96C10 678 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 ST7Q9NRC1 585 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 USP25Q9UHP3 1055 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 AGTPBP1Q9UPW5 1226 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 UNC13BO14795 1591 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 VIL1P09327 827 aaKnown RBP7.96□□□□□ -1.14
SCN9A-202ENST00000409435 KLRC2P26717 231 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 KRT76Q01546 638 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 TMEM132BQ14DG7 1078 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 HERC4Q5GLZ8 1057 aaPredicted RBP7.96□□□□□ -1.14
SCN9A-202ENST00000409435 FBXO46Q6PJ61 603 aaPredicted RBP7.96□□□□□ -1.14
SCN9A-202ENST00000409435 NEK8Q86SG6 692 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 MIS12Q9H081 205 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 USP44Q9H0E7 712 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 ZSCAN16Q9H4T2 348 aaPredicted RBP7.96□□□□□ -1.14
SCN9A-202ENST00000409435 LSM7Q9UK45 103 aaKnown RBP7.96□□□□□ -1.14
SCN9A-202ENST00000409435 hCG_1642624A0A1W2PR95 340 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 SLC15A5A6NIM6 579 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 HNRNPDLO14979 420 aaKnown RBP7.96□□□□□ -1.14
SCN9A-202ENST00000409435 ALDH1A3P47895 512 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 OSTNP61366 133 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 PPP2R3AQ06190 1150 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 PLCB4Q15147 1175 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 HSP90AA5PQ58FG0 334 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 TTC38Q5R3I4 469 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 ANKRD23Q86SG2 305 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 CCDC170Q8IYT3 715 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 BLIDQ8IZY5 108 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 ARHGAP24Q8N264 748 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 BEST2Q8NFU1 509 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 POMGNT1Q8WZA1 660 aa7.96□□□□□ -1.14
SCN9A-202ENST00000409435 IFIH1Q9BYX4 1025 aaKnown RBP7.96□□□□□ -1.14
SCN9A-202ENST00000409435 THG1LQ9NWX6 298 aaKnown RBP7.96□□□□□ -1.14
SCN9A-202ENST00000409435 RPAP1Q9BWH6 1393 aaPredicted RBP7.95□□□□□ -1.14
SCN9A-202ENST00000409435 STK10O94804 968 aaKnown RBP7.95□□□□□ -1.14
SCN9A-202ENST00000409435 ITGA4P13612 1032 aa7.95□□□□□ -1.14
SCN9A-202ENST00000409435 ERVK-9P63128 1117 aa7.95□□□□□ -1.14
SCN9A-202ENST00000409435 ERVK-24P63145 666 aa7.95□□□□□ -1.14
SCN9A-202ENST00000409435 BAATQ14032 418 aaPredicted RBP7.95□□□□□ -1.14
SCN9A-202ENST00000409435 NDUFAF2Q8N183 169 aa7.95□□□□□ -1.14
SCN9A-202ENST00000409435 FSIP1Q8NA03 581 aa7.95□□□□□ -1.14
SCN9A-202ENST00000409435 NCAPGQ9BPX3 1015 aa7.95□□□□□ -1.14
SCN9A-202ENST00000409435 SELENOSQ9BQE4 189 aa7.95□□□□□ -1.14
SCN9A-202ENST00000409435 C2orf40Q9H1Z8 148 aa7.95□□□□□ -1.14
SCN9A-202ENST00000409435 MRFAP1Q9Y605 127 aa7.95□□□□□ -1.14
SCN9A-202ENST00000409435 C2CD2LO14523 706 aa7.95□□□□□ -1.14
SCN9A-202ENST00000409435 SMIM24O75264 130 aa7.95□□□□□ -1.14
SCN9A-202ENST00000409435 ADCY5O95622 1261 aa7.95□□□□□ -1.14
SCN9A-202ENST00000409435 HDXQ7Z353 690 aa7.95□□□□□ -1.14
SCN9A-202ENST00000409435 DDX53Q86TM3 631 aaKnown RBP7.95□□□□□ -1.14
SCN9A-202ENST00000409435 GPKOWQ92917 476 aaPredicted RBP eCLIP7.95□□□□□ -1.14
SCN9A-202ENST00000409435 ATG4CQ96DT6 458 aa7.95□□□□□ -1.14
SCN9A-202ENST00000409435 ESYT1Q9BSJ8 1104 aa7.95□□□□□ -1.14
SCN9A-202ENST00000409435 ASCC2Q9H1I8 757 aaPredicted RBP7.95□□□□□ -1.14
SCN9A-202ENST00000409435 DCTPP1Q9H773 170 aa7.95□□□□□ -1.14
SCN9A-202ENST00000409435 G3BP2Q9UN86 482 aaKnown RBP7.95□□□□□ -1.14
SCN9A-202ENST00000409435 MED1Q15648 1581 aaPredicted RBP7.95□□□□□ -1.14
SCN9A-202ENST00000409435 RICTORQ6R327 1708 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms