RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 BUB1O43683 1085 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 FAM86B2P0C5J1 330 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 MYBP10242 640 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 KLRC1P26715 233 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 FKBP3Q00688 224 aaKnown RBP10.88□□□□□ -0.67
MSH2-202ENST00000406134 FAM26FQ5R3K3 315 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 IRF2BP2Q7Z5L9 587 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 CCDC84Q86UT8 332 aaPredicted RBP10.88□□□□□ -0.67
MSH2-202ENST00000406134 CATSPER3Q86XQ3 398 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 DNAAF5Q86Y56 855 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 PCMTD1Q96MG8 357 aaPredicted RBP10.88□□□□□ -0.67
MSH2-202ENST00000406134 NLRC4Q9NPP4 1024 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 USP40Q9NVE5 1235 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 AIPL1Q9NZN9 384 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 PCDHGC5Q9Y5F6 944 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 GIT2Q14161 759 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 SEPT2Q15019 361 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 CEP63Q96MT8 703 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 INPP4AQ96PE3 977 aaPredicted RBP10.88□□□□□ -0.67
MSH2-202ENST00000406134 IKZF4Q9H2S9 585 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 PSTPIP2Q9H939 334 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 FEZ2Q9UHY8 353 aaPredicted RBP10.88□□□□□ -0.67
MSH2-202ENST00000406134 TMEM59LQ9UK28 342 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 PCDHA12Q9UN75 941 aa10.88□□□□□ -0.67
MSH2-202ENST00000406134 ASTN1O14525 1302 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 ACTN1P12814 892 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 ECHS1P30084 290 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 MMP14P50281 582 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 CACNB3P54284 484 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 SNAP25P60880 206 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 TRADDQ15628 312 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 DOK7Q18PE1 504 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 TSR1Q2NL82 804 aaKnown RBP10.87□□□□□ -0.67
MSH2-202ENST00000406134 TTMPQ5BVD1 217 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 TATDN1Q6P1N9 297 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 SLF2Q8IX21 1173 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 NELFCDQ8IXH7 590 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 CCDC47Q96A33 483 aaKnown RBP10.87□□□□□ -0.67
MSH2-202ENST00000406134 BORCS6Q96GS4 357 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 FAM184BQ9ULE4 1060 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 GRID2IPA4D2P6 1211 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 C6orf229H3BNL8 230 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 EIF3JO75822 258 aaKnown RBP10.87□□□□□ -0.67
MSH2-202ENST00000406134 GLI1P08151 1106 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 EEF2P13639 858 aaKnown RBP10.87□□□□□ -0.67
MSH2-202ENST00000406134 GCFC2P16383 781 aaKnown RBP10.87□□□□□ -0.67
MSH2-202ENST00000406134 NAB2Q15742 525 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 MEI1Q5TIA1 1274 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 HHIPL2Q6UWX4 724 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 LSM14BQ9BX40 385 aaKnown RBP10.87□□□□□ -0.67
MSH2-202ENST00000406134 ANO3Q9BYT9 981 aa10.87□□□□□ -0.67
MSH2-202ENST00000406134 HOXA7P31268 230 aaPredicted RBP10.86□□□□□ -0.67
MSH2-202ENST00000406134 GPATCH4Q5T3I0 446 aaKnown RBP10.86□□□□□ -0.67
MSH2-202ENST00000406134 SRLQ86TD4 932 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 CCDC102AQ96A19 550 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 CRACR2AQ9BSW2 395 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 GDF3Q9NR23 364 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 HYOU1Q9Y4L1 999 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 TNS1Q9HBL0 1735 aaKnown RBP10.86□□□□□ -0.67
MSH2-202ENST00000406134 RSPH10B2B2RC85 870 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 TRIM66O15016 1216 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 SERPING1P05155 500 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 FAM153BP0C7A2 387 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 RSPH10BP0C881 870 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 MAGEA1P43355 309 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 JAM2P57087 298 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 KCNA1Q09470 495 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 SPA17Q15506 151 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 CDC37Q16543 378 aaPredicted RBP10.86□□□□□ -0.67
MSH2-202ENST00000406134 FAM153CQ494X1 144 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 CYP2W1Q8TAV3 490 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 RUBCNQ92622 972 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 CAVIN3Q969G5 261 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 TRERF1Q96PN7 1200 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 DHX36Q9H2U1 1008 aaKnown RBP10.86□□□□□ -0.67
MSH2-202ENST00000406134 FAM153AQ9UHL3 310 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 PACSIN2Q9UNF0 486 aaPredicted RBP10.86□□□□□ -0.67
MSH2-202ENST00000406134 TACC1O75410 805 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 PALMO75781 387 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 POLR2FP61218 127 aaKnown RBP10.86□□□□□ -0.67
MSH2-202ENST00000406134 SLC18A3Q16572 532 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 KCTD19Q17RG1 926 aaPredicted RBP10.86□□□□□ -0.67
MSH2-202ENST00000406134 Q4G0T1 1027 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 KIAA1755Q5JYT7 1200 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 ZNF571Q7Z3V5 609 aaPredicted RBP10.86□□□□□ -0.67
MSH2-202ENST00000406134 GPBP1Q86WP2 473 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 LRRC57Q8N9N7 239 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 CDK5RAP3Q96JB5 506 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 FIZ1Q96SL8 496 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 PLEKHA4Q9H4M7 779 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 TRAF3IP3Q9Y228 551 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 KDM3AQ9Y4C1 1321 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 COL4A5P29400 1685 aa10.86□□□□□ -0.67
MSH2-202ENST00000406134 USP11P51784 963 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 MOXD1Q6UVY6 613 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 SLC30A10Q6XR72 485 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 RNF10Q8N5U6 811 aaKnown RBP10.85□□□□□ -0.67
MSH2-202ENST00000406134 ZDHHC15Q96MV8 337 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 REEP2Q9BRK0 252 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 PITPNM2Q9BZ72 1349 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms