RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 GNASQ5JWF2 1037 aa17.99■□□□□ 0.47
HMGA1-204ENST00000401473 ZNF396Q96N95 335 aaPredicted RBP17.99■□□□□ 0.47
HMGA1-204ENST00000401473 LAD1O00515 517 aa17.99■□□□□ 0.47
HMGA1-204ENST00000401473 ATG7O95352 703 aa17.99■□□□□ 0.47
HMGA1-204ENST00000401473 MYCNP04198 464 aaPredicted RBP17.99■□□□□ 0.47
HMGA1-204ENST00000401473 PPP2R5CQ13362 524 aa17.99■□□□□ 0.47
HMGA1-204ENST00000401473 TEKT3Q9BXF9 490 aa17.99■□□□□ 0.47
HMGA1-204ENST00000401473 ATP6V1DQ9Y5K8 247 aa17.99■□□□□ 0.47
HMGA1-204ENST00000401473 CHMP2AO43633 222 aa17.98■□□□□ 0.47
HMGA1-204ENST00000401473 MMP3P08254 477 aa17.98■□□□□ 0.47
HMGA1-204ENST00000401473 PRPHP41219 470 aa17.98■□□□□ 0.47
HMGA1-204ENST00000401473 KCNA10Q16322 511 aa17.98■□□□□ 0.47
HMGA1-204ENST00000401473 ATL3Q6DD88 541 aa17.98■□□□□ 0.47
HMGA1-204ENST00000401473 ABHD15Q6UXT9 468 aa17.98■□□□□ 0.47
HMGA1-204ENST00000401473 SEPT1Q8WYJ6 367 aa17.98■□□□□ 0.47
HMGA1-204ENST00000401473 TNPO1Q92973 898 aaKnown RBP17.98■□□□□ 0.47
HMGA1-204ENST00000401473 CEP131Q9UPN4 1083 aa17.98■□□□□ 0.47
HMGA1-204ENST00000401473 POTEMA6NI47 508 aa17.97■□□□□ 0.47
HMGA1-204ENST00000401473 NOP56O00567 594 aaKnown RBP17.97■□□□□ 0.47
HMGA1-204ENST00000401473 PPFIA4O75335 1185 aa17.97■□□□□ 0.47
HMGA1-204ENST00000401473 TCF7P36402 384 aaPredicted RBP17.97■□□□□ 0.47
HMGA1-204ENST00000401473 KRT76Q01546 638 aa17.97■□□□□ 0.47
HMGA1-204ENST00000401473 ARL6IP4Q66PJ3 421 aaKnown RBP17.97■□□□□ 0.47
HMGA1-204ENST00000401473 ZNF746Q6NUN9 644 aaPredicted RBP17.97■□□□□ 0.47
HMGA1-204ENST00000401473 PCYT2Q99447 389 aa17.97■□□□□ 0.47
HMGA1-204ENST00000401473 SPC25Q9HBM1 224 aa17.97■□□□□ 0.47
HMGA1-204ENST00000401473 RCOR1Q9UKL0 485 aa17.97■□□□□ 0.47
HMGA1-204ENST00000401473 CFAP45Q9UL16 551 aa17.97■□□□□ 0.47
HMGA1-204ENST00000401473 MYH9P35579 1960 aaKnown RBP17.97■□□□□ 0.47
HMGA1-204ENST00000401473 BMP15O95972 392 aa17.97■□□□□ 0.47
HMGA1-204ENST00000401473 HOXD8P13378 290 aaPredicted RBP17.97■□□□□ 0.47
HMGA1-204ENST00000401473 CST5P28325 142 aaPredicted RBP17.97■□□□□ 0.47
HMGA1-204ENST00000401473 CDC25AP30304 524 aa17.97■□□□□ 0.47
HMGA1-204ENST00000401473 CPT1AP50416 773 aa17.97■□□□□ 0.47
HMGA1-204ENST00000401473 DTHD1Q6ZMT9 781 aa17.97■□□□□ 0.47
HMGA1-204ENST00000401473 RNF180Q86T96 592 aa17.97■□□□□ 0.47
HMGA1-204ENST00000401473 DIS3LQ8TF46 1054 aaKnown RBP17.97■□□□□ 0.47
HMGA1-204ENST00000401473 DISC1Q9NRI5 854 aa17.97■□□□□ 0.47
HMGA1-204ENST00000401473 ELP1O95163 1332 aa17.96■□□□□ 0.47
HMGA1-204ENST00000401473 VWA3AA6NCI4 1184 aa17.96■□□□□ 0.47
HMGA1-204ENST00000401473 YEATS4O95619 227 aa17.96■□□□□ 0.47
HMGA1-204ENST00000401473 ASGR1P07306 291 aa17.96■□□□□ 0.47
HMGA1-204ENST00000401473 FXR2P51116 673 aaKnown RBP eCLIP17.96■□□□□ 0.47
HMGA1-204ENST00000401473 IGSF22Q8N9C0 903 aa17.96■□□□□ 0.47
HMGA1-204ENST00000401473 CLIC6Q96NY7 704 aa17.96■□□□□ 0.47
HMGA1-204ENST00000401473 C16orf70Q9BSU1 422 aa17.96■□□□□ 0.47
HMGA1-204ENST00000401473 GDPD2Q9HCC8 539 aa17.96■□□□□ 0.47
HMGA1-204ENST00000401473 FBXO2Q9UK22 296 aaPredicted RBP17.96■□□□□ 0.47
HMGA1-204ENST00000401473 PCDHA10Q9Y5I2 948 aa17.96■□□□□ 0.47
HMGA1-204ENST00000401473 IGKV6D-21A0A0A0MT36 114 aa17.95■□□□□ 0.46
HMGA1-204ENST00000401473 SPTLC2O15270 562 aa17.95■□□□□ 0.46
HMGA1-204ENST00000401473 NCLP19338 710 aaKnown RBP17.95■□□□□ 0.46
HMGA1-204ENST00000401473 KRT85P78386 507 aa17.95■□□□□ 0.46
HMGA1-204ENST00000401473 PURAQ00577 322 aaKnown RBP17.95■□□□□ 0.46
HMGA1-204ENST00000401473 PDIA5Q14554 519 aa17.95■□□□□ 0.46
HMGA1-204ENST00000401473 STK38Q15208 465 aa17.95■□□□□ 0.46
HMGA1-204ENST00000401473 DGKDQ16760 1214 aa17.95■□□□□ 0.46
HMGA1-204ENST00000401473 TRIM50Q86XT4 487 aa17.95■□□□□ 0.46
HMGA1-204ENST00000401473 CCDC60Q8IWA6 550 aaPredicted RBP17.95■□□□□ 0.46
HMGA1-204ENST00000401473 ARRDC4Q8NCT1 418 aa17.95■□□□□ 0.46
HMGA1-204ENST00000401473 SAMM50Q9Y512 469 aa17.95■□□□□ 0.46
HMGA1-204ENST00000401473 SRPRBQ9Y5M8 271 aaKnown RBP17.95■□□□□ 0.46
HMGA1-204ENST00000401473 WDR64B1ANS9 1081 aa17.95■□□□□ 0.46
HMGA1-204ENST00000401473 NCAPH2Q6IBW4 605 aa17.95■□□□□ 0.46
HMGA1-204ENST00000401473 SWSAP1Q6NVH7 229 aa17.95■□□□□ 0.46
HMGA1-204ENST00000401473 CXCL17Q6UXB2 119 aa17.95■□□□□ 0.46
HMGA1-204ENST00000401473 UBE2Q1Q7Z7E8 422 aa17.95■□□□□ 0.46
HMGA1-204ENST00000401473 SMAP1Q8IYB5 467 aaPredicted RBP17.95■□□□□ 0.46
HMGA1-204ENST00000401473 LEO1Q8WVC0 666 aaPredicted RBP17.95■□□□□ 0.46
HMGA1-204ENST00000401473 KAT2BQ92831 832 aa17.95■□□□□ 0.46
HMGA1-204ENST00000401473 RGL1Q9NZL6 768 aa17.95■□□□□ 0.46
HMGA1-204ENST00000401473 MORC2Q9Y6X9 1032 aaPredicted RBP17.95■□□□□ 0.46
HMGA1-204ENST00000401473 PP2D1A8MPX8 630 aa17.94■□□□□ 0.46
HMGA1-204ENST00000401473 DNM1LO00429 736 aa17.94■□□□□ 0.46
HMGA1-204ENST00000401473 SUPT20HL2P0C7V6 817 aa17.94■□□□□ 0.46
HMGA1-204ENST00000401473 ZNF286BP0CG31 522 aa17.94■□□□□ 0.46
HMGA1-204ENST00000401473 SPECC1Q5M775 1068 aa17.94■□□□□ 0.46
HMGA1-204ENST00000401473 UTP14CQ5TAP6 766 aaKnown RBP17.94■□□□□ 0.46
HMGA1-204ENST00000401473 MIER3Q7Z3K6 550 aa17.94■□□□□ 0.46
HMGA1-204ENST00000401473 HSD17B14Q9BPX1 270 aa17.94■□□□□ 0.46
HMGA1-204ENST00000401473 TNRC18O15417 2968 aaPredicted RBP17.93■□□□□ 0.46
HMGA1-204ENST00000401473 PPP6R2O75170 966 aa17.93■□□□□ 0.46
HMGA1-204ENST00000401473 LGR5O75473 907 aa17.93■□□□□ 0.46
HMGA1-204ENST00000401473 SLITRK3O94933 977 aa17.93■□□□□ 0.46
HMGA1-204ENST00000401473 LGALS2P05162 132 aa17.93■□□□□ 0.46
HMGA1-204ENST00000401473 ATP4AP20648 1035 aa17.93■□□□□ 0.46
HMGA1-204ENST00000401473 SFNP31947 248 aa17.93■□□□□ 0.46
HMGA1-204ENST00000401473 ACLYP53396 1101 aa17.93■□□□□ 0.46
HMGA1-204ENST00000401473 UGCGQ16739 394 aa17.93■□□□□ 0.46
HMGA1-204ENST00000401473 BRDTQ58F21 947 aaPredicted RBP17.93■□□□□ 0.46
HMGA1-204ENST00000401473 CSRNP2Q9H175 543 aa17.93■□□□□ 0.46
HMGA1-204ENST00000401473 WRAP73Q9P2S5 460 aaPredicted RBP17.93■□□□□ 0.46
HMGA1-204ENST00000401473 LRWD1Q9UFC0 647 aa17.93■□□□□ 0.46
HMGA1-204ENST00000401473 SCN10AQ9Y5Y9 1956 aa17.93■□□□□ 0.46
HMGA1-204ENST00000401473 MYL3P08590 195 aa17.92■□□□□ 0.46
HMGA1-204ENST00000401473 JAK3P52333 1124 aa17.92■□□□□ 0.46
HMGA1-204ENST00000401473 EPHA7Q15375 998 aa17.92■□□□□ 0.46
HMGA1-204ENST00000401473 TMEM266Q2M3C6 531 aa17.92■□□□□ 0.46
HMGA1-204ENST00000401473 AXDND1Q5T1B0 1012 aaPredicted RBP17.92■□□□□ 0.46
HMGA1-204ENST00000401473 MIS18BP1Q6P0N0 1132 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms