RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, human

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGB1-205	ENST00000399494	CTCFL	Q8NI51	663 aa	Predicted RBP	32.75	■■■□□ 2.83
HMGB1-205	ENST00000399494	KHSRP	Q92945	711 aa	Known RBP eCLIP	32.75	■■■□□ 2.83	2e-8	■□□□□ 8.9
HMGB1-205	ENST00000399494	SAMD11	Q96NU1	681 aa		32.75	■■■□□ 2.83
HMGB1-205	ENST00000399494	ZNF215	Q9UL58	517 aa	Predicted RBP	32.75	■■■□□ 2.83
HMGB1-205	ENST00000399494	DDAH1	O94760	285 aa		32.74	■■■□□ 2.83
HMGB1-205	ENST00000399494	KIF5B	P33176	963 aa		32.74	■■■□□ 2.83
HMGB1-205	ENST00000399494	LMBR1	Q8WVP7	490 aa		32.74	■■■□□ 2.83
HMGB1-205	ENST00000399494	NEK1	Q96PY6	1258 aa		32.74	■■■□□ 2.83
HMGB1-205	ENST00000399494	LZTS2	Q9BRK4	669 aa		32.74	■■■□□ 2.83
HMGB1-205	ENST00000399494	MTA3	Q9BTC8	594 aa		32.74	■■■□□ 2.83
HMGB1-205	ENST00000399494	UPP2	O95045	317 aa		32.73	■■■□□ 2.83
HMGB1-205	ENST00000399494	ARHGAP4	P98171	946 aa		32.73	■■■□□ 2.83
HMGB1-205	ENST00000399494	SP4	Q02446	784 aa		32.73	■■■□□ 2.83
HMGB1-205	ENST00000399494	LEXM	Q3ZCV2	418 aa		32.73	■■■□□ 2.83
HMGB1-205	ENST00000399494	NLRX1	Q86UT6	975 aa		32.73	■■■□□ 2.83
HMGB1-205	ENST00000399494	RASEF	Q8IZ41	740 aa		32.73	■■■□□ 2.83
HMGB1-205	ENST00000399494	MRPL38	Q96DV4	380 aa	Known RBP	32.73	■■■□□ 2.83
HMGB1-205	ENST00000399494	TMEM87B	Q96K49	555 aa		32.73	■■■□□ 2.83
HMGB1-205	ENST00000399494	YME1L1	Q96TA2	773 aa		32.73	■■■□□ 2.83
HMGB1-205	ENST00000399494	LRFN3	Q9BTN0	628 aa		32.73	■■■□□ 2.83
HMGB1-205	ENST00000399494	CD320	Q9NPF0	282 aa		32.73	■■■□□ 2.83
HMGB1-205	ENST00000399494	BRWD1	Q9NSI6	2320 aa		32.72	■■■□□ 2.83
HMGB1-205	ENST00000399494	TSGA10IP	Q3SY00	556 aa		32.72	■■■□□ 2.83
HMGB1-205	ENST00000399494	SRBD1	Q8N5C6	995 aa	Known RBP	32.72	■■■□□ 2.83
HMGB1-205	ENST00000399494	GIMAP8	Q8ND71	665 aa	Predicted RBP	32.72	■■■□□ 2.83
HMGB1-205	ENST00000399494	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	32.72	■■■□□ 2.83
HMGB1-205	ENST00000399494	APBB2	Q92870	758 aa		32.72	■■■□□ 2.83
HMGB1-205	ENST00000399494	SEC63	Q9UGP8	760 aa	Known RBP	32.72	■■■□□ 2.83
HMGB1-205	ENST00000399494	NRCAM	Q92823	1304 aa		32.72	■■■□□ 2.83
HMGB1-205	ENST00000399494		H3BNC9	293 aa		32.71	■■■□□ 2.83
HMGB1-205	ENST00000399494	ATP9A	O75110	1047 aa		32.71	■■■□□ 2.83
HMGB1-205	ENST00000399494	PLEKHA8P1	O95397	391 aa		32.71	■■■□□ 2.83
HMGB1-205	ENST00000399494	HSPA4	P34932	840 aa		32.71	■■■□□ 2.83
HMGB1-205	ENST00000399494	NFXL1	Q6ZNB6	911 aa		32.71	■■■□□ 2.83
HMGB1-205	ENST00000399494	CHRNA1	P02708	482 aa		32.7	■■■□□ 2.83
HMGB1-205	ENST00000399494	GNAQ	P50148	359 aa		32.7	■■■□□ 2.83
HMGB1-205	ENST00000399494	RPAIN	Q86UA6	219 aa		32.7	■■■□□ 2.83
HMGB1-205	ENST00000399494	TMEM192	Q8IY95	271 aa		32.7	■■■□□ 2.83
HMGB1-205	ENST00000399494	TMTC2	Q8N394	836 aa		32.7	■■■□□ 2.83
HMGB1-205	ENST00000399494	GPRASP2	Q96D09	838 aa		32.7	■■■□□ 2.83
HMGB1-205	ENST00000399494	IFIH1	Q9BYX4	1025 aa	Known RBP	32.7	■■■□□ 2.83
HMGB1-205	ENST00000399494	EPB41L2	O43491	1005 aa	Known RBP	32.69	■■■□□ 2.82
HMGB1-205	ENST00000399494	KCNA5	P22460	613 aa		32.69	■■■□□ 2.82
HMGB1-205	ENST00000399494	TCF7	P36402	384 aa	Predicted RBP	32.69	■■■□□ 2.82
HMGB1-205	ENST00000399494	GPM6B	Q13491	265 aa		32.69	■■■□□ 2.82
HMGB1-205	ENST00000399494	PTPRO	Q16827	1216 aa		32.69	■■■□□ 2.82
HMGB1-205	ENST00000399494	CMTR1	Q8N1G2	835 aa	Known RBP	32.69	■■■□□ 2.82
HMGB1-205	ENST00000399494	PSTPIP2	Q9H939	334 aa		32.69	■■■□□ 2.82
HMGB1-205	ENST00000399494	GSTTP1	A0A1W2PQM5	241 aa		32.68	■■■□□ 2.82
HMGB1-205	ENST00000399494	CCDC69	A6NI79	296 aa		32.68	■■■□□ 2.82
HMGB1-205	ENST00000399494	SH2B2	O14492	632 aa	Predicted RBP	32.68	■■■□□ 2.82
HMGB1-205	ENST00000399494	KCNA2	P16389	499 aa		32.68	■■■□□ 2.82
HMGB1-205	ENST00000399494	PLA2G5	P39877	138 aa		32.68	■■■□□ 2.82
HMGB1-205	ENST00000399494	COL9A3	Q14050	684 aa	Predicted RBP	32.68	■■■□□ 2.82
HMGB1-205	ENST00000399494	ADCK5	Q3MIX3	580 aa		32.68	■■■□□ 2.82
HMGB1-205	ENST00000399494	RUFY4	Q6ZNE9	571 aa		32.68	■■■□□ 2.82
HMGB1-205	ENST00000399494	FAM178B	Q8IXR5	827 aa		32.68	■■■□□ 2.82
HMGB1-205	ENST00000399494	LRRC2	Q9BYS8	371 aa		32.68	■■■□□ 2.82
HMGB1-205	ENST00000399494	EHMT1	Q9H9B1	1298 aa		32.68	■■■□□ 2.82
HMGB1-205	ENST00000399494	HMGB1	P09429	215 aa	Known RBP	32.67	■■■□□ 2.82
HMGB1-205	ENST00000399494	ITGB5	P18084	799 aa		32.67	■■■□□ 2.82
HMGB1-205	ENST00000399494	SEPT1	Q8WYJ6	367 aa		32.67	■■■□□ 2.82
HMGB1-205	ENST00000399494	PI4K2B	G5E9Z4	385 aa		32.66	■■■□□ 2.82
HMGB1-205	ENST00000399494	TMEM31	Q5JXX7	168 aa		32.66	■■■□□ 2.82
HMGB1-205	ENST00000399494	KCNB2	Q92953	911 aa		32.66	■■■□□ 2.82
HMGB1-205	ENST00000399494	CDHR1	Q96JP9	859 aa		32.66	■■■□□ 2.82
HMGB1-205	ENST00000399494	C11orf16	Q9NQ32	467 aa		32.66	■■■□□ 2.82
HMGB1-205	ENST00000399494	SNX14	Q9Y5W7	946 aa		32.66	■■■□□ 2.82
HMGB1-205	ENST00000399494	UBIAD1	Q9Y5Z9	338 aa		32.66	■■■□□ 2.82
HMGB1-205	ENST00000399494	COL4A6	Q14031	1691 aa		32.66	■■■□□ 2.82
HMGB1-205	ENST00000399494	GPR37L1	O60883	481 aa		32.65	■■■□□ 2.82
HMGB1-205	ENST00000399494	RXRA	P19793	462 aa		32.65	■■■□□ 2.82
HMGB1-205	ENST00000399494	LIFR	P42702	1097 aa		32.65	■■■□□ 2.82
HMGB1-205	ENST00000399494	TAF2	Q6P1X5	1199 aa		32.65	■■■□□ 2.82
HMGB1-205	ENST00000399494	DHX32	Q7L7V1	743 aa	Known RBP	32.65	■■■□□ 2.82
HMGB1-205	ENST00000399494	BANK1	Q8NDB2	785 aa		32.65	■■■□□ 2.82
HMGB1-205	ENST00000399494	NEK9	Q8TD19	979 aa		32.65	■■■□□ 2.82
HMGB1-205	ENST00000399494	FAM122A	Q96E09	287 aa		32.65	■■■□□ 2.82
HMGB1-205	ENST00000399494	IL17RA	Q96F46	866 aa		32.65	■■■□□ 2.82
HMGB1-205	ENST00000399494	JAKMIP1	Q96N16	626 aa	Known RBP	32.65	■■■□□ 2.82
HMGB1-205	ENST00000399494	MGAT3	Q09327	533 aa		32.64	■■■□□ 2.82
HMGB1-205	ENST00000399494	GRXCR2	A6NFK2	248 aa		32.63	■■■□□ 2.81
HMGB1-205	ENST00000399494	CALM1	P0DP23	149 aa		32.63	■■■□□ 2.81
HMGB1-205	ENST00000399494	CALM2	P0DP24	149 aa		32.63	■■■□□ 2.81
HMGB1-205	ENST00000399494	CALM3	P0DP25	149 aa		32.63	■■■□□ 2.81
HMGB1-205	ENST00000399494	GHR	P10912	638 aa		32.63	■■■□□ 2.81
HMGB1-205	ENST00000399494	IL9	P15248	144 aa		32.63	■■■□□ 2.81
HMGB1-205	ENST00000399494	PPFIA1	Q13136	1202 aa		32.63	■■■□□ 2.81
HMGB1-205	ENST00000399494	LPIN1	Q14693	890 aa		32.63	■■■□□ 2.81
HMGB1-205	ENST00000399494	UBE2S	Q16763	222 aa		32.63	■■■□□ 2.81
HMGB1-205	ENST00000399494	TIGD5	Q53EQ6	642 aa		32.63	■■■□□ 2.81
HMGB1-205	ENST00000399494	MARCH8	Q5T0T0	291 aa		32.63	■■■□□ 2.81
HMGB1-205	ENST00000399494	PTCRA	Q6ISU1	281 aa	Predicted RBP	32.63	■■■□□ 2.81
HMGB1-205	ENST00000399494	TCEANC2	Q96MN5	208 aa		32.63	■■■□□ 2.81
HMGB1-205	ENST00000399494	ERAP1	Q9NZ08	941 aa		32.63	■■■□□ 2.81
HMGB1-205	ENST00000399494	KAT6A	Q92794	2004 aa		32.62	■■■□□ 2.81
HMGB1-205	ENST00000399494	hCG_1642624	A0A1W2PR95	340 aa		32.62	■■■□□ 2.81
HMGB1-205	ENST00000399494	MBLAC1	A4D2B0	266 aa	Predicted RBP	32.62	■■■□□ 2.81
HMGB1-205	ENST00000399494	ENPP3	O14638	875 aa		32.62	■■■□□ 2.81
HMGB1-205	ENST00000399494	MAFG	O15525	162 aa		32.62	■■■□□ 2.81

Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms