RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 CHURC1Q8WUH1 139 aa7.87□□□□□ -1.15
SYNE1-208ENST00000367256 CDCA7Q9BWT1 371 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-208ENST00000367256 PARD6BQ9BYG5 372 aa7.87□□□□□ -1.15
SYNE1-208ENST00000367256 THAP9Q9H5L6 903 aa7.87□□□□□ -1.15
SYNE1-208ENST00000367256 AS3MTQ9HBK9 375 aa7.87□□□□□ -1.15
SYNE1-208ENST00000367256 ARHGAP10A1A4S6 786 aa7.87□□□□□ -1.15
SYNE1-208ENST00000367256 MYO1EQ12965 1108 aa7.87□□□□□ -1.15
SYNE1-208ENST00000367256 GCKRQ14397 625 aa7.87□□□□□ -1.15
SYNE1-208ENST00000367256 TEDDM1Q5T9Z0 273 aa7.87□□□□□ -1.15
SYNE1-208ENST00000367256 DNAJC24Q6P3W2 148 aa7.87□□□□□ -1.15
SYNE1-208ENST00000367256 FBXO38Q6PIJ6 1188 aa7.87□□□□□ -1.15
SYNE1-208ENST00000367256 PPP4R3CPQ6ZMV5 832 aa7.87□□□□□ -1.15
SYNE1-208ENST00000367256 EP400NLQ6ZTU2 488 aa7.87□□□□□ -1.15
SYNE1-208ENST00000367256 DACH2Q96NX9 599 aa7.87□□□□□ -1.15
SYNE1-208ENST00000367256 ZMYND12Q9H0C1 365 aa7.87□□□□□ -1.15
SYNE1-208ENST00000367256 ABCF3Q9NUQ8 709 aa7.87□□□□□ -1.15
SYNE1-208ENST00000367256 IQANK1A0A1B0GTG1 560 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 ANO9A1A5B4 782 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 HABP4Q5JVS0 413 aaKnown RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.86□□□□□ -1.157e-7■■■■■ 57.4
SYNE1-208ENST00000367256 EXT2Q93063 718 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 MAGOHBQ96A72 148 aaKnown RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 RCOR1Q9UKL0 485 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 CCDC195A0A1B0GUA6 201 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 ANXA13P27216 316 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 CACTINQ8WUQ7 758 aaKnown RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 PTPRTO14522 1441 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 TARSL2A2RTX5 802 aaKnown RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 MOCS3O95396 460 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 HSPD1P10809 573 aaKnown RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 HDLBPQ00341 1268 aaKnown RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 TFAP4Q01664 338 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 TRIP13Q15645 432 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 PGBD1Q96JS3 809 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 SH3GL3Q99963 347 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 CDV3Q9UKY7 258 aaKnown RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 PCDHA12Q9UN75 941 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 FNDC3AQ9Y2H6 1198 aaKnown RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 DAB2P98082 770 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 TMED8Q6PL24 325 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 CYTH2Q99418 400 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 WARS2Q9UGM6 360 aaKnown RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 ITM2BQ9Y287 266 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 FAM95CA0A1B0GW59 222 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 ZNF233A6NK53 670 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 ARL4AP40617 200 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 KCNJ6P48051 423 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 CTSWP56202 376 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 TAF1BQ53T94 588 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 ZNF790Q6PG37 636 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 CMTR1Q8N1G2 835 aaKnown RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 SPATA17Q96L03 361 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 RNF26Q9BY78 433 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 L3MBTL1Q9Y468 752 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 PRPSAP2O60256 369 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 LRRN2O75325 713 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 E2F6O75461 281 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 ACSL3O95573 720 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 CEBPAP49715 358 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 TIMM10P62072 90 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 PSMD2Q13200 908 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 TCP11X2Q5H9J9 407 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 CSADQ9Y600 493 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 USP19O94966 1318 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 CHGBP05060 677 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 IL13P35225 146 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 DDIT3P35638 169 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 SIX6OS1Q8N1H7 587 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 NDE1Q9NXR1 346 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 SUN2Q9UH99 717 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 LAMC1P11047 1609 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 AFPP02771 609 aaKnown RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 PYGBP11216 843 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 GCFC2P16383 781 aaKnown RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 HOXC9P31274 260 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 IRX1P78414 480 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 MKRN3Q13064 507 aaKnown RBP7.86□□□□□ -1.15
SYNE1-208ENST00000367256 CRLF3Q8IUI8 442 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 TRIML2Q8N7C3 387 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 FANCBQ8NB91 859 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 BATF3Q9NR55 127 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 ADAM21Q9UKJ8 722 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 STRIP2Q9ULQ0 834 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 AKT3Q9Y243 479 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 SYNGAP1Q96PV0 1343 aa7.86□□□□□ -1.15
SYNE1-208ENST00000367256 H0YIN7 160 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 ZNF189O75820 626 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-208ENST00000367256 FOSP01100 380 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-208ENST00000367256 ALAS1P13196 640 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 IGBP1P78318 339 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 FAM26FQ5R3K3 315 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 GAS2L3Q86XJ1 694 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 APOL6Q9BWW8 343 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 SLC12A6Q9UHW9 1150 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 THRAP3Q9Y2W1 955 aaKnown RBP7.85□□□□□ -1.15
SYNE1-208ENST00000367256 FOXP2O15409 715 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 HSPA4LO95757 839 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 LRRC63Q05C16 580 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 RBL2Q08999 1139 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 LARP4BQ92615 738 aaKnown RBP7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms