RNA–Protein interactions for RNA: ENST00000366216.6

CSNK1E-202, Transcript of casein kinase 1 epsilon, humanhuman

TSL 2

Gene CSNK1E, Length 1,005 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1E-202ENST00000366216 FIBPO43427 364 aa12.83□□□□□ -0.36
CSNK1E-202ENST00000366216 PLEKHA8P1O95397 391 aa12.83□□□□□ -0.36
CSNK1E-202ENST00000366216 SMARCA1P28370 1054 aa12.83□□□□□ -0.36
CSNK1E-202ENST00000366216 OAZ1P54368 228 aa12.83□□□□□ -0.36
CSNK1E-202ENST00000366216 ERVK-21P61565 698 aa12.83□□□□□ -0.36
CSNK1E-202ENST00000366216 ZP2Q05996 745 aa12.83□□□□□ -0.36
CSNK1E-202ENST00000366216 FAM173BQ6P4H8 233 aa12.83□□□□□ -0.36
CSNK1E-202ENST00000366216 SRBD1Q8N5C6 995 aaKnown RBP12.83□□□□□ -0.36
CSNK1E-202ENST00000366216 RETREG2Q8NC44 543 aa12.83□□□□□ -0.36
CSNK1E-202ENST00000366216 NEK9Q8TD19 979 aa12.83□□□□□ -0.36
CSNK1E-202ENST00000366216 AIFM3Q96NN9 605 aa12.83□□□□□ -0.36
CSNK1E-202ENST00000366216 ZBED2Q9BTP6 218 aa12.83□□□□□ -0.36
CSNK1E-202ENST00000366216 ACAD9Q9H845 621 aa12.83□□□□□ -0.36
CSNK1E-202ENST00000366216 POLR3EQ9NVU0 708 aa12.83□□□□□ -0.36
CSNK1E-202ENST00000366216 NYAP2Q9P242 653 aa12.83□□□□□ -0.36
CSNK1E-202ENST00000366216 RIF1Q5UIP0 2472 aaKnown RBP12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 PALM3A6NDB9 673 aaPredicted RBP12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 GADD45BO75293 160 aaPredicted RBP12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 TTLL1O95922 423 aa12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 XBP1P17861 261 aa12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 U2AF2P26368 475 aaKnown RBP eCLIP12.82□□□□□ -0.366e-7■■■■□ 20.7
CSNK1E-202ENST00000366216 SNAP25P60880 206 aa12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 WDR5P61964 334 aaKnown RBP12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 PURAQ00577 322 aaKnown RBP12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 FOXK2Q01167 660 aa12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 PKN1Q16512 942 aa12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 MUM1L1Q5H9M0 696 aa12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 RASGRP2Q7LDG7 609 aa12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 LEO1Q8WVC0 666 aaPredicted RBP12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 SPATA32Q96LK8 384 aa12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 TGS1Q96RS0 853 aaKnown RBP12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 CTAGE1Q96RT6 745 aa12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 PRKAG3Q9UGI9 489 aa12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 MAD2L2Q9UI95 211 aa12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 RCOR1Q9UKL0 485 aa12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 FAM186AA6NE01 2351 aa12.82□□□□□ -0.36
CSNK1E-202ENST00000366216 C19orf67A6NJJ6 358 aa12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 H3BQ06 376 aaPredicted RBP12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 MMP1P03956 469 aa12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 BFSP2Q13515 415 aa12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 SAFBQ15424 915 aaKnown RBP eCLIP12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 FAM47CQ5HY64 1035 aa12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 FAM177A1Q8N128 213 aaPredicted RBP12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 CMTR1Q8N1G2 835 aaKnown RBP12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 LRRC47Q8N1G4 583 aaKnown RBP12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 CCDC82Q8N4S0 544 aa12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 PRSS33Q8NF86 280 aa12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 FOXP1Q9H334 677 aaPredicted RBP12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 GJB4Q9NTQ9 266 aa12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 TFIP11Q9UBB9 837 aaKnown RBP12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 CLIP2Q9UDT6 1046 aa12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 FEM1BQ9UK73 627 aa12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 FAM50BQ9Y247 325 aa12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 V9GY48 417 aaPredicted RBP12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 DCHS1Q96JQ0 3298 aa12.81□□□□□ -0.36
CSNK1E-202ENST00000366216 VPS13AQ96RL7 3174 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 LINC01553A4QN01 128 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 MYL3P08590 195 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 PARP1P09874 1014 aaKnown RBP12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 SNHG28P0DPA3 235 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 CPT1AP50416 773 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 PTPN5P54829 565 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 DEFB103AP81534 67 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 PFKFB3Q16875 520 aaPredicted RBP12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 NBPF20Q3BBV1 942 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 DUSP28Q4G0W2 176 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 MYSM1Q5VVJ2 828 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 NFRKBQ6P4R8 1299 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 ADHFE1Q8IWW8 467 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 MKL1Q969V6 931 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 SYAP1Q96A49 352 aaPredicted RBP12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 USP28Q96RU2 1077 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 RAD9AQ99638 391 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 MTG1Q9BT17 334 aaPredicted RBP12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 SPZ1Q9BXG8 430 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 VTA1Q9NP79 307 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 RNF146Q9NTX7 359 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 RTEL1Q9NZ71 1219 aa12.8□□□□□ -0.36
CSNK1E-202ENST00000366216 GJB5O95377 273 aa12.79□□□□□ -0.36
CSNK1E-202ENST00000366216 YEATS4O95619 227 aa12.79□□□□□ -0.36
CSNK1E-202ENST00000366216 SCG2P13521 617 aa12.79□□□□□ -0.36
CSNK1E-202ENST00000366216 ASPRV1Q53RT3 343 aa12.79□□□□□ -0.36
CSNK1E-202ENST00000366216 STAG2Q8N3U4 1231 aa12.79□□□□□ -0.36
CSNK1E-202ENST00000366216 FBXO22Q8NEZ5 403 aa12.79□□□□□ -0.36
CSNK1E-202ENST00000366216 MORC4Q8TE76 937 aa12.79□□□□□ -0.36
CSNK1E-202ENST00000366216 BBXQ8WY36 941 aaPredicted RBP12.79□□□□□ -0.36
CSNK1E-202ENST00000366216 MRPL38Q96DV4 380 aaKnown RBP12.79□□□□□ -0.36
CSNK1E-202ENST00000366216 PHF20Q9BVI0 1012 aa12.79□□□□□ -0.36
CSNK1E-202ENST00000366216 GZF1Q9H116 711 aaPredicted RBP12.79□□□□□ -0.36
CSNK1E-202ENST00000366216 SH3GLB2Q9NR46 395 aa12.79□□□□□ -0.36
CSNK1E-202ENST00000366216 ISY1Q9ULR0 285 aaKnown RBP12.79□□□□□ -0.36
CSNK1E-202ENST00000366216 COL4A6Q14031 1691 aa12.79□□□□□ -0.36
CSNK1E-202ENST00000366216 KAT6AQ92794 2004 aa12.79□□□□□ -0.36
CSNK1E-202ENST00000366216 KIAA1671Q9BY89 1806 aa12.78□□□□□ -0.36
CSNK1E-202ENST00000366216 MYO15AQ9UKN7 3530 aa12.78□□□□□ -0.36
CSNK1E-202ENST00000366216 KLRF2D3W0D1 207 aa12.78□□□□□ -0.36
CSNK1E-202ENST00000366216 PDHBP11177 359 aa12.78□□□□□ -0.36
CSNK1E-202ENST00000366216 IRS1P35568 1242 aa12.78□□□□□ -0.36
CSNK1E-202ENST00000366216 NASPP49321 788 aaPredicted RBP12.78□□□□□ -0.36
CSNK1E-202ENST00000366216 PTPN11Q06124 597 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms