RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 TMEM260Q9NX78 707 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 PCDHB13Q9Y5F0 798 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 TAF1P21675 1872 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 BTBD18B2RXH4 712 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 ASAP2O43150 1006 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 SKIP12755 728 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 QARSP47897 775 aaKnown RBP10.23□□□□□ -0.77
UPF2-202ENST00000357604 SYCP1Q15431 976 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 MUM1L1Q5H9M0 696 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 RASGRP4Q8TDF6 673 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 MAML3Q96JK9 1138 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 SUGCTQ9HAC7 445 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 BTBD7Q9P203 1132 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 NFASCO94856 1347 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 PTMAP06454 111 aaKnown RBP10.23□□□□□ -0.77
UPF2-202ENST00000357604 MARCKSP29966 332 aaPredicted RBP10.23□□□□□ -0.77
UPF2-202ENST00000357604 PTPN11Q06124 597 aaPredicted RBP10.23□□□□□ -0.77
UPF2-202ENST00000357604 MS4A4AQ96JQ5 239 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 PDCD2LQ9BRP1 358 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 MYH1P12882 1939 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 NFIBO00712 420 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 ATF7P17544 494 aaPredicted RBP10.23□□□□□ -0.77
UPF2-202ENST00000357604 XKR3Q5GH77 459 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 MYCT1Q8N699 235 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 POTEB3A0JP26 581 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 CYP3A4P08684 503 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 EVCP57679 992 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 POTEBQ6S5H4 581 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 DHX58Q96C10 678 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 TMEM39AQ9NV64 488 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 COL4A3BPQ9Y5P4 624 aa10.23□□□□□ -0.77
UPF2-202ENST00000357604 DENND3A2RUS2 1198 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 HSPA8P11142 646 aaKnown RBP10.22□□□□□ -0.77
UPF2-202ENST00000357604 HSD17B4P51659 736 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 BBXQ8WY36 941 aaPredicted RBP10.22□□□□□ -0.77
UPF2-202ENST00000357604 DEFB118Q96PH6 123 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 ZBBXA8MT70 800 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 DUSP11O75319 330 aaKnown RBP10.22□□□□□ -0.77
UPF2-202ENST00000357604 CAPN15O75808 1086 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 PRPHP41219 470 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 UBE2HP62256 183 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 MFSD10Q14728 455 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 MTERF2Q49AM1 385 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 SWSAP1Q6NVH7 229 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 ANKLE1Q8NAG6 615 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 TSHZ2Q9NRE2 1034 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 GABBR1Q9UBS5 961 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 EFCAB14O75071 495 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 MYL1P05976 194 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 GPBP1Q86WP2 473 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 KIFAP3Q92845 792 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 MARK3P27448 753 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 CUL4AQ13619 759 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 RPS6KC1Q96S38 1066 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 AGXT2Q9BYV1 514 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 IMPG2Q9BZV3 1241 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 TTC12Q9H892 705 aaPredicted RBP10.22□□□□□ -0.77
UPF2-202ENST00000357604 WBP1LQ9NX94 342 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 GINS2Q9Y248 185 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 PTCH2Q9Y6C5 1203 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 NID2Q14112 1375 aa10.22□□□□□ -0.77
UPF2-202ENST00000357604 FAM155AB1AL88 458 aaPredicted RBP10.21□□□□□ -0.77
UPF2-202ENST00000357604 HOXA2O43364 376 aa10.21□□□□□ -0.77
UPF2-202ENST00000357604 STAG3L1P0CL83 205 aa10.21□□□□□ -0.77
UPF2-202ENST00000357604 PGBD4Q96DM1 585 aa10.21□□□□□ -0.77
UPF2-202ENST00000357604 AGO4Q9HCK5 861 aaKnown RBP10.21□□□□□ -0.77
UPF2-202ENST00000357604 KIAA1551Q9HCM1 1747 aa10.21□□□□□ -0.77
UPF2-202ENST00000357604 CCDC192P0DO97 292 aa10.21□□□□□ -0.77
UPF2-202ENST00000357604 GJA5P36382 358 aa10.21□□□□□ -0.77
UPF2-202ENST00000357604 TCF7P36402 384 aaPredicted RBP10.21□□□□□ -0.77
UPF2-202ENST00000357604 PSEN2P49810 448 aa10.21□□□□□ -0.77
UPF2-202ENST00000357604 POSTNQ15063 836 aa10.21□□□□□ -0.77
UPF2-202ENST00000357604 SEPT8Q92599 483 aa10.21□□□□□ -0.77
UPF2-202ENST00000357604 LARSQ9P2J5 1176 aaKnown RBP10.21□□□□□ -0.77
UPF2-202ENST00000357604 MYH7P12883 1935 aa10.21□□□□□ -0.77
UPF2-202ENST00000357604 BCRP11274 1271 aa10.21□□□□□ -0.78
UPF2-202ENST00000357604 CYP2C19P33261 490 aa10.21□□□□□ -0.78
UPF2-202ENST00000357604 PTGDRQ13258 359 aa10.21□□□□□ -0.78
UPF2-202ENST00000357604 OTOP1Q7RTM1 612 aa10.21□□□□□ -0.78
UPF2-202ENST00000357604 PPP2R3CQ969Q6 453 aa10.21□□□□□ -0.78
UPF2-202ENST00000357604 SENP7Q9BQF6 1050 aa10.21□□□□□ -0.78
UPF2-202ENST00000357604 KCND2Q9NZV8 630 aa10.21□□□□□ -0.78
UPF2-202ENST00000357604 FRMD4BQ9Y2L6 1034 aa10.21□□□□□ -0.78
UPF2-202ENST00000357604 COL4A5P29400 1685 aa10.21□□□□□ -0.78
UPF2-202ENST00000357604 DOCK1Q14185 1865 aa10.21□□□□□ -0.78
UPF2-202ENST00000357604 CBFA2T2O43439 604 aa10.21□□□□□ -0.78
UPF2-202ENST00000357604 CELF3Q5SZQ8 465 aaKnown RBP10.21□□□□□ -0.78
UPF2-202ENST00000357604 CFHR5Q9BXR6 569 aa10.21□□□□□ -0.78
UPF2-202ENST00000357604 KCNH7Q9NS40 1196 aa10.21□□□□□ -0.78
UPF2-202ENST00000357604 TFIP11Q9UBB9 837 aaKnown RBP10.21□□□□□ -0.78
UPF2-202ENST00000357604 PPFIA4O75335 1185 aa10.2□□□□□ -0.78
UPF2-202ENST00000357604 ELNP15502 786 aa10.2□□□□□ -0.78
UPF2-202ENST00000357604 LIG4P49917 911 aa10.2□□□□□ -0.78
UPF2-202ENST00000357604 PDIA5Q14554 519 aa10.2□□□□□ -0.78
UPF2-202ENST00000357604 MXD4Q14582 209 aaPredicted RBP10.2□□□□□ -0.78
UPF2-202ENST00000357604 NBR1Q14596 966 aa10.2□□□□□ -0.78
UPF2-202ENST00000357604 RRP1BQ14684 758 aaKnown RBP10.2□□□□□ -0.78
UPF2-202ENST00000357604 SENP6Q9GZR1 1112 aaPredicted RBP10.2□□□□□ -0.78
UPF2-202ENST00000357604 HPS5Q9UPZ3 1129 aa10.2□□□□□ -0.78
UPF2-202ENST00000357604 LAMB1P07942 1786 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms