RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 RESP18Q5W5W9 173 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 AP1ARQ63HQ0 302 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 ARL6IP4Q66PJ3 421 aaKnown RBP11.2□□□□□ -0.62
SYNE1-203ENST00000354674 USP17L6PQ6QN14 398 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 SHC4Q6S5L8 630 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 OPTNQ96CV9 577 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 HPSEQ9Y251 543 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 COL11A1P12107 1806 aaPredicted RBP11.2□□□□□ -0.62
SYNE1-203ENST00000354674 LAD1O00515 517 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 TAL1P17542 331 aaPredicted RBP11.2□□□□□ -0.62
SYNE1-203ENST00000354674 GJA5P36382 358 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 SSR1P43307 286 aaKnown RBP11.2□□□□□ -0.62
SYNE1-203ENST00000354674 PTGDRQ13258 359 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 SAMD3Q8N6K7 520 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 CLEC4DQ8WXI8 215 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 MRPS27Q92552 414 aaKnown RBP11.2□□□□□ -0.62
SYNE1-203ENST00000354674 FERMT2Q96AC1 680 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 ATG4CQ96DT6 458 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 OTUD5Q96G74 571 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 AGBL1Q96MI9 1066 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 DDX19AQ9NUU7 478 aaKnown RBP11.2□□□□□ -0.62
SYNE1-203ENST00000354674 ZBED4O75132 1171 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 EIF3JO75822 258 aaKnown RBP11.2□□□□□ -0.62
SYNE1-203ENST00000354674 FOSP01100 380 aaPredicted RBP11.2□□□□□ -0.62
SYNE1-203ENST00000354674 TXLNAP40222 546 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 USP8P40818 1118 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 PRPHP41219 470 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 CHMP4BP1P59074 171 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 BEND6Q5SZJ8 279 aaPredicted RBP11.2□□□□□ -0.62
SYNE1-203ENST00000354674 TREML2Q5T2D2 321 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 PPP4R3AQ6IN85 833 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 LBX2Q6XYB7 198 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 AFAP1L1Q8TED9 768 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 WNK4Q96J92 1243 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 HOXC10Q9NYD6 342 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 TRPM7Q96QT4 1865 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 SPDYE16A6NNV3 312 aaPredicted RBP11.19□□□□□ -0.62
SYNE1-203ENST00000354674 ZNF202O95125 648 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 MCM7P33993 719 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 HSD17B4P51659 736 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 MRPS25P82663 173 aaKnown RBP11.19□□□□□ -0.62
SYNE1-203ENST00000354674 FAM160A1Q05DH4 1040 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 DPCR1Q3MIW9 517 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 CHADLQ6NUI6 762 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 FMR1NBQ8N0W7 255 aaPredicted RBP11.19□□□□□ -0.62
SYNE1-203ENST00000354674 MBOAT7Q96N66 472 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 ANO3Q9BYT9 981 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 MAF1Q9H063 256 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 ACBD3Q9H3P7 528 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 GBA2Q9HCG7 927 aaPredicted RBP11.19□□□□□ -0.62
SYNE1-203ENST00000354674 MAP3K20Q9NYL2 800 aaKnown RBP11.19□□□□□ -0.62
SYNE1-203ENST00000354674 CCPG1Q9ULG6 757 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 MYH7BA7E2Y1 1941 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 CYP3A7-CYP3A51PA0A087WV96 503 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 ZEB2O60315 1214 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 KIF4AO95239 1232 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 CYP3A7P24462 503 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 USP11P51784 963 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 ADKP55263 362 aaKnown RBP11.19□□□□□ -0.62
SYNE1-203ENST00000354674 GRIN1Q05586 938 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 IL17AQ16552 155 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 POTEEQ6S8J3 1075 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 MOXD1Q6UVY6 613 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 IGSF22Q8N9C0 903 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 FSIP1Q8NA03 581 aa11.19□□□□□ -0.62
SYNE1-203ENST00000354674 ZNF214Q9UL59 606 aaPredicted RBP11.19□□□□□ -0.62
SYNE1-203ENST00000354674 CALRP27797 417 aaKnown RBP11.18□□□□□ -0.62
SYNE1-203ENST00000354674 SREBF1P36956 1147 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 STX1AQ16623 288 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 CST9Q5W186 159 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 RBM43Q6ZSC3 357 aaKnown RBP11.18□□□□□ -0.62
SYNE1-203ENST00000354674 TOGARAM2Q6ZUX3 1019 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 SLC10A4Q96EP9 437 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 CABS1Q96KC9 395 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 RAVER2Q9HCJ3 691 aaKnown RBP11.18□□□□□ -0.62
SYNE1-203ENST00000354674 AGTPBP1Q9UPW5 1226 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 SERPINC1P01008 464 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 CYP3A4P08684 503 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 NDUFA8P51970 172 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 GSDMDP57764 484 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 MTF1Q14872 753 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 GPAT2Q6NUI2 795 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 TBC1D31Q96DN5 1066 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 MTMR9Q96QG7 549 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 NAP1L4Q99733 375 aaKnown RBP11.18□□□□□ -0.62
SYNE1-203ENST00000354674 TMEM60Q9H2L4 133 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 ANKZF1Q9H8Y5 726 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 VWA3AA6NCI4 1184 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 GCOM1H8Y6P7 765 aaPredicted RBP11.18□□□□□ -0.62
SYNE1-203ENST00000354674 MAP2K7O14733 419 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 CCNT1O60563 726 aaKnown RBP11.18□□□□□ -0.62
SYNE1-203ENST00000354674 POLR2MP0CAP2 368 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 GCFC2P16383 781 aaKnown RBP11.18□□□□□ -0.62
SYNE1-203ENST00000354674 USP4Q13107 963 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 TMEM132BQ14DG7 1078 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 LETM2Q2VYF4 491 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 FASTKD5Q7L8L6 764 aaKnown RBP11.18□□□□□ -0.62
SYNE1-203ENST00000354674 C2orf69Q8N8R5 385 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 TBC1D5Q92609 795 aa11.18□□□□□ -0.62
SYNE1-203ENST00000354674 SPDL1Q96EA4 605 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms