RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 UBA1P22314 1058 aaKnown RBP13.01□□□□□ -0.33
RTN3-204ENST00000354497 ARHGAP4P98171 946 aa13.01□□□□□ -0.33
RTN3-204ENST00000354497 MFSD6Q6ZSS7 791 aa13.01□□□□□ -0.33
RTN3-204ENST00000354497 RBM23Q86U06 439 aaKnown RBP13.01□□□□□ -0.33
RTN3-204ENST00000354497 TTC14Q96N46 770 aa13.01□□□□□ -0.33
RTN3-204ENST00000354497 DCBLD2Q96PD2 775 aa13.01□□□□□ -0.33
RTN3-204ENST00000354497 RNPEPQ9H4A4 650 aa13.01□□□□□ -0.33
RTN3-204ENST00000354497 DCTPP1Q9H773 170 aa13.01□□□□□ -0.33
RTN3-204ENST00000354497 TRPC6Q9Y210 931 aa13.01□□□□□ -0.33
RTN3-204ENST00000354497 KIAA1217Q5T5P2 1943 aa13.01□□□□□ -0.33
RTN3-204ENST00000354497 CAND2O75155 1236 aa13□□□□□ -0.33
RTN3-204ENST00000354497 KDM4AO75164 1064 aa13□□□□□ -0.33
RTN3-204ENST00000354497 FGAP02671 866 aa13□□□□□ -0.33
RTN3-204ENST00000354497 GHRP10912 638 aa13□□□□□ -0.33
RTN3-204ENST00000354497 GNAT1P11488 350 aa13□□□□□ -0.33
RTN3-204ENST00000354497 NRIP1P48552 1158 aa13□□□□□ -0.33
RTN3-204ENST00000354497 RRP1P56182 461 aaKnown RBP13□□□□□ -0.33
RTN3-204ENST00000354497 SIGLEC14Q08ET2 396 aa13□□□□□ -0.33
RTN3-204ENST00000354497 KCNV1Q6PIU1 500 aa13□□□□□ -0.33
RTN3-204ENST00000354497 ADGRD2Q7Z7M1 963 aa13□□□□□ -0.33
RTN3-204ENST00000354497 ZBTB33Q86T24 672 aa13□□□□□ -0.33
RTN3-204ENST00000354497 PNMA1Q8ND90 353 aa13□□□□□ -0.33
RTN3-204ENST00000354497 GPKOWQ92917 476 aaPredicted RBP eCLIP13□□□□□ -0.333e-6■□□□□ 9.4
RTN3-204ENST00000354497 PDCD2LQ9BRP1 358 aa13□□□□□ -0.33
RTN3-204ENST00000354497 MAF1Q9H063 256 aa13□□□□□ -0.33
RTN3-204ENST00000354497 IRF2BPLQ9H1B7 796 aa13□□□□□ -0.33
RTN3-204ENST00000354497 KAT14Q9H8E8 782 aa13□□□□□ -0.33
RTN3-204ENST00000354497 BARX2Q9UMQ3 279 aaPredicted RBP13□□□□□ -0.33
RTN3-204ENST00000354497 USP15Q9Y4E8 981 aaPredicted RBP13□□□□□ -0.33
RTN3-204ENST00000354497 ATG2AQ2TAZ0 1938 aa13□□□□□ -0.33
RTN3-204ENST00000354497 LOC730098B7Z3J9 87 aa12.99□□□□□ -0.33
RTN3-204ENST00000354497 H0Y858 1186 aa12.99□□□□□ -0.33
RTN3-204ENST00000354497 RGS20O76081 388 aa12.99□□□□□ -0.33
RTN3-204ENST00000354497 IBSPP21815 317 aaPredicted RBP12.99□□□□□ -0.33
RTN3-204ENST00000354497 HOXA13P31271 388 aaPredicted RBP12.99□□□□□ -0.33
RTN3-204ENST00000354497 FOXK2Q01167 660 aa12.99□□□□□ -0.33
RTN3-204ENST00000354497 SP2Q02086 613 aa12.99□□□□□ -0.33
RTN3-204ENST00000354497 ALX1Q15699 326 aa12.99□□□□□ -0.33
RTN3-204ENST00000354497 UTP14CQ5TAP6 766 aaKnown RBP12.99□□□□□ -0.33
RTN3-204ENST00000354497 C20orf194Q5TEA3 1177 aa12.99□□□□□ -0.33
RTN3-204ENST00000354497 MSLNLQ96KJ4 702 aa12.99□□□□□ -0.33
RTN3-204ENST00000354497 TLR9Q9NR96 1032 aa12.99□□□□□ -0.33
RTN3-204ENST00000354497 CLEC1BQ9P126 229 aa12.99□□□□□ -0.33
RTN3-204ENST00000354497 PCDHB8Q9UN66 801 aa12.99□□□□□ -0.33
RTN3-204ENST00000354497 TRIM6-TRIM34B2RNG4 842 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 EYA4O95677 639 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 LINC00271P0C7V0 271 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 MX1P20591 662 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 CCND2P30279 289 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 AVPR2P30518 371 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 SP4Q02446 784 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 PGM5Q15124 567 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 PAN2Q504Q3 1202 aaKnown RBP12.98□□□□□ -0.33
RTN3-204ENST00000354497 TRIM50Q86XT4 487 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 TBC1D10CQ8IV04 446 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 EFHBQ8N7U6 833 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 SMRP1Q8NCR6 262 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 IL31RAQ8NI17 732 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 ESR2Q92731 530 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 PLVAPQ9BX97 442 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 HELLSQ9NRZ9 838 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 PLAGL2Q9UPG8 496 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 MRPL42Q9Y6G3 142 aaKnown RBP12.98□□□□□ -0.33
RTN3-204ENST00000354497 TECTAO75443 2155 aa12.98□□□□□ -0.33
RTN3-204ENST00000354497 NEDD4P46934 1319 aa12.97□□□□□ -0.33
RTN3-204ENST00000354497 USP34Q70CQ2 3546 aa12.97□□□□□ -0.33
RTN3-204ENST00000354497 PARP1P09874 1014 aaKnown RBP12.97□□□□□ -0.33
RTN3-204ENST00000354497 NCLP19338 710 aaKnown RBP12.97□□□□□ -0.33
RTN3-204ENST00000354497 DNAJB1P25685 340 aa12.97□□□□□ -0.33
RTN3-204ENST00000354497 HOXC8P31273 242 aa12.97□□□□□ -0.33
RTN3-204ENST00000354497 HSD17B4P51659 736 aa12.97□□□□□ -0.33
RTN3-204ENST00000354497 ASPRV1Q53RT3 343 aa12.97□□□□□ -0.33
RTN3-204ENST00000354497 POF1BQ8WVV4 589 aa12.97□□□□□ -0.33
RTN3-204ENST00000354497 CLP1Q92989 425 aaKnown RBP12.97□□□□□ -0.33
RTN3-204ENST00000354497 FAM227BQ96M60 508 aa12.97□□□□□ -0.33
RTN3-204ENST00000354497 PHF7Q9BWX1 381 aaPredicted RBP12.97□□□□□ -0.33
RTN3-204ENST00000354497 AMNQ9BXJ7 453 aa12.97□□□□□ -0.33
RTN3-204ENST00000354497 RNF41Q9H4P4 317 aaPredicted RBP12.97□□□□□ -0.33
RTN3-204ENST00000354497 BCAS3Q9H6U6 928 aa12.97□□□□□ -0.33
RTN3-204ENST00000354497 JMJD4Q9H9V9 463 aa12.97□□□□□ -0.33
RTN3-204ENST00000354497 ZNF215Q9UL58 517 aaPredicted RBP12.97□□□□□ -0.33
RTN3-204ENST00000354497 KMT2EQ8IZD2 1858 aa12.97□□□□□ -0.33
RTN3-204ENST00000354497 MYH7BA7E2Y1 1941 aa12.97□□□□□ -0.33
RTN3-204ENST00000354497 A0A0D9SFI3 127 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 ENPP3O14638 875 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 PPFIA3O75145 1194 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 ITGB1P05556 798 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 SP100P23497 879 aaPredicted RBP12.96□□□□□ -0.33
RTN3-204ENST00000354497 COASYQ13057 564 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 CAMK1Q14012 370 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 LPIN1Q14693 890 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 MCMDC2Q4G0Z9 681 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 FAM26DQ5JW98 314 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 CYFIP1Q7L576 1253 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 VSIG10LQ86VR7 867 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 FCHSD1Q86WN1 690 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 DGKHQ86XP1 1220 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 KLHL23Q8NBE8 558 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 MICAL1Q8TDZ2 1067 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 LMBR1Q8WVP7 490 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms