RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 PDE6BP35913 854 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 MESDQ14696 234 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 ODR4Q5SWX8 454 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 ALKBH5Q6P6C2 394 aaKnown RBP13.08□□□□□ -0.32
USP1-201ENST00000339950 FBXO11Q86XK2 927 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 CSRNP1Q96S65 589 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 CDCA7Q9BWT1 371 aaPredicted RBP13.08□□□□□ -0.32
USP1-201ENST00000339950 JMJD4Q9H9V9 463 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 AMACRQ9UHK6 382 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 GGT7Q9UJ14 662 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 LOC102724159A0A0B4J2E5 919 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 PWP2Q15269 919 aaKnown RBP13.07□□□□□ -0.32
USP1-201ENST00000339950 GLYCTKQ8IVS8 523 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 FAM237AA0A1B0GTK4 181 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 GAS7O60861 476 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 ERLIN2O94905 339 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 DLATP10515 647 aaKnown RBP13.07□□□□□ -0.32
USP1-201ENST00000339950 GBP2P32456 591 aaPredicted RBP13.07□□□□□ -0.32
USP1-201ENST00000339950 TNNC1P63316 161 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 C2CD6Q53TS8 623 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 PPM1KQ8N3J5 372 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 TBC1D16Q8TBP0 767 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 HOOK2Q96ED9 719 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 CCSER1Q9C0I3 900 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 TMOD4Q9NZQ9 345 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 FEZ2Q9UHY8 353 aaPredicted RBP13.07□□□□□ -0.32
USP1-201ENST00000339950 EIF3CLB5ME19 914 aaKnown RBP13.07□□□□□ -0.32
USP1-201ENST00000339950 SPOPO43791 374 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 KLRC4O43908 158 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 TCP1P17987 556 aaKnown RBP13.07□□□□□ -0.32
USP1-201ENST00000339950 PLTPP55058 493 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 ECM1Q16610 540 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 BANK1Q8NDB2 785 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 PPM1EQ8WY54 764 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 EIF3CQ99613 913 aaKnown RBP13.07□□□□□ -0.32
USP1-201ENST00000339950 LZTS2Q9BRK4 669 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 KCNK9Q9NPC2 374 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 KBTBD4Q9NVX7 518 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 SNX12Q9UMY4 172 aa13.07□□□□□ -0.32
USP1-201ENST00000339950 PPEF1O14829 653 aaPredicted RBP13.06□□□□□ -0.32
USP1-201ENST00000339950 SEMA3EO15041 775 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 NEFHP12036 1026 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 ATP2B4P23634 1241 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 INPP5BP32019 993 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 NF2P35240 595 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 FAM178BQ8IXR5 827 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 ZNF668Q96K58 619 aaPredicted RBP13.06□□□□□ -0.32
USP1-201ENST00000339950 FAM118BQ9BPY3 351 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 STIM2Q9P246 746 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 ARHGEF35A5YM69 484 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 PALM3A6NDB9 673 aaPredicted RBP13.06□□□□□ -0.32
USP1-201ENST00000339950 ZNF263O14978 683 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 FAM153BP0C7A2 387 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 ALAS1P13196 640 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 CHRNA5P30532 468 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 TUBB2AQ13885 445 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 FAM153CQ494X1 144 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 OTUD6AQ7L8S5 288 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 TUBB2BQ9BVA1 445 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 FAM153AQ9UHL3 310 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 VIMP08670 466 aaKnown RBP13.06□□□□□ -0.32
USP1-201ENST00000339950 HP1BP3Q5SSJ5 553 aaPredicted RBP13.06□□□□□ -0.32
USP1-201ENST00000339950 AK8Q96MA6 479 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 SALL4Q9UJQ4 1053 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 HPCAL4Q9UM19 191 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 USP20Q9Y2K6 914 aa13.06□□□□□ -0.32
USP1-201ENST00000339950 MMP10P09238 476 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 H2AFZP0C0S5 128 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 PCP11498 1178 aaKnown RBP13.05□□□□□ -0.32
USP1-201ENST00000339950 ABCB5Q2M3G0 1257 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 FBXW10Q5XX13 1052 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 CCNI2Q6ZMN8 369 aaPredicted RBP13.05□□□□□ -0.32
USP1-201ENST00000339950 H2AFVQ71UI9 128 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 ANKRD42Q8N9B4 389 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 TNFRSF25Q93038 417 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 PNMA5Q96PV4 448 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 LRRC27Q9C0I9 530 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 ZMYND12Q9H0C1 365 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 ZBTB12Q9Y330 459 aaPredicted RBP13.05□□□□□ -0.32
USP1-201ENST00000339950 RABGAP1Q9Y3P9 1069 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 PNMA6FA0A0J9YX94 578 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 F5H6K3 240 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 ATMINO43313 823 aaPredicted RBP13.05□□□□□ -0.32
USP1-201ENST00000339950 MAP2K2P36507 400 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 STAT1P42224 750 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 ARHGAP4P98171 946 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 KLRC3Q07444 240 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 PAK2Q13177 524 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 TRAPPC11Q7Z392 1133 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 SPIRE2Q8WWL2 714 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 CCDC114Q96M63 670 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 BLOC1S4Q9NUP1 217 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 FRMD4BQ9Y2L6 1034 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 UTRNP46939 3433 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 MYH2Q9UKX2 1941 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 TMOD1P28289 359 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 CASP5P51878 434 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 NAA25Q14CX7 972 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 CCDC38Q502W7 563 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 EPC2Q52LR7 807 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms