RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 FAM163AQ96GL9 167 aaPredicted RBP11.13□□□□□ -0.63
USP54-201ENST00000339859 TIPINQ9BVW5 301 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 KIAA1683Q9H0B3 1180 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 MKRN1Q9UHC7 482 aaKnown RBP11.13□□□□□ -0.63
USP54-201ENST00000339859 GGPS1O95749 300 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 MYZAPP0CAP1 466 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 LACTBP83111 547 aaPredicted RBP11.13□□□□□ -0.63
USP54-201ENST00000339859 PPFIA1Q13136 1202 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 THEM5Q8N1Q8 247 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 ELMOD1Q8N336 334 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 IGDCC4Q8TDY8 1250 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 UBXN4Q92575 508 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 GJA10Q969M2 543 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 CCDC127Q96BQ5 260 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 CPA4Q9UI42 421 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 LARGE1O95461 756 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 NR3C2P08235 984 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 VCAM1P19320 739 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 RGMBQ6NW40 437 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 AIFM3Q96NN9 605 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 GADD45BO75293 160 aaPredicted RBP11.12□□□□□ -0.63
USP54-201ENST00000339859 ZNF658Q5TYW1 1059 aaPredicted RBP11.12□□□□□ -0.63
USP54-201ENST00000339859 ZSCAN30Q86W11 494 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 RHPN2Q8IUC4 686 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 CLEC10AQ8IUN9 316 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 CENPHQ9H3R5 247 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 MTUS1Q9ULD2 1270 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 CAPN9O14815 690 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 TUBB4AP04350 444 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 BPIFB4P59827 614 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 MRPS9P82933 396 aaKnown RBP11.12□□□□□ -0.63
USP54-201ENST00000339859 RESTQ13127 1097 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 DSTYKQ6XUX3 929 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 POTEDQ86YR6 584 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 LINC00301Q8NCQ3 95 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 ZNF830Q96NB3 372 aaPredicted RBP11.12□□□□□ -0.63
USP54-201ENST00000339859 KIAA1586Q9HCI6 787 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 STIM2Q9P246 746 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 SPOPO43791 374 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 ABL1P00519 1130 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 ACTN1P12814 892 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 PPP4R3CPQ6ZMV5 832 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 SMAP1Q8IYB5 467 aaPredicted RBP11.12□□□□□ -0.63
USP54-201ENST00000339859 SEPT1Q8WYJ6 367 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 NT5C1BQ96P26 610 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 POLR3FQ9H1D9 316 aaPredicted RBP11.12□□□□□ -0.63
USP54-201ENST00000339859 CICQ96RK0 1608 aaPredicted RBP11.12□□□□□ -0.63
USP54-201ENST00000339859 AK9Q5TCS8 1911 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 KIF28PB7ZC32 967 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 NKRFO15226 690 aaKnown RBP eCLIP11.12□□□□□ -0.63
USP54-201ENST00000339859 SLFN14P0C7P3 912 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 INPP5BP32019 993 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 PEX3P56589 373 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 GNG11P61952 73 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 RAD54LQ92698 747 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 BHMT2Q9H2M3 363 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 JMJD4Q9H9V9 463 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 KCNQ5Q9NR82 932 aa11.12□□□□□ -0.63
USP54-201ENST00000339859 SKILP12757 684 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 ERCC3P19447 782 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 PLCB3Q01970 1234 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 KLHL30Q0D2K2 578 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 NOGQ13253 232 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 IER5Q5VY09 327 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 CYFIP1Q7L576 1253 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 OTUD6BQ8N6M0 293 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 LXNQ9BS40 222 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 PPP1R9AQ9ULJ8 1098 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 NHSL1Q5SYE7 1610 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 TBX3O15119 743 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 KPNA6O60684 536 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 APOBEC3HQ6NTF7 200 aaKnown RBP11.11□□□□□ -0.63
USP54-201ENST00000339859 FAM186BQ8IYM0 893 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 ZFP91Q96JP5 570 aaPredicted RBP11.11□□□□□ -0.63
USP54-201ENST00000339859 EFCC1Q9HA90 598 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 MAGEB2O15479 319 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 CACNB1Q02641 598 aaPredicted RBP11.11□□□□□ -0.63
USP54-201ENST00000339859 UBL4BQ8N7F7 174 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 PCSK9Q8NBP7 692 aaKnown RBP11.11□□□□□ -0.63
USP54-201ENST00000339859 GPRASP2Q96D09 838 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 AGBL1Q96MI9 1066 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 RRN3P2A6NIE6 340 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 NR2F2P24468 414 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 DSG3P32926 999 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 PPP1R2P3Q6NXS1 205 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 STAT1P42224 750 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 KIF11P52732 1056 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 TFAMQ00059 246 aaKnown RBP11.11□□□□□ -0.63
USP54-201ENST00000339859 IFFO1Q0D2I5 559 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 STOX1Q6ZVD7 989 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 EMILIN3Q9NT22 766 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 SYNPO2Q9UMS6 1093 aa11.11□□□□□ -0.63
USP54-201ENST00000339859 SHTN1A0MZ66 631 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 ZNF233A6NK53 670 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 OAZ1P54368 228 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 CCDC14Q49A88 953 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 CCDC91Q7Z6B0 441 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 ZNF579Q8NAF0 562 aaKnown RBP11.1□□□□□ -0.63
USP54-201ENST00000339859 BAG1Q99933 345 aaPredicted RBP11.1□□□□□ -0.63
USP54-201ENST00000339859 EIF2AK1Q9BQI3 630 aaKnown RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 138.2 ms