RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 FECHP22830 423 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 RPL5P46777 297 aaKnown RBP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 CCT4P50991 539 aaKnown RBP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 MAP3K7CLP57077 242 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 NCALDP61601 193 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 MECOMQ03112 1051 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 MTX1Q13505 466 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 DDB1Q16531 1140 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 HS2ST1Q7LGA3 356 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 VSIG1Q86XK7 387 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 TRIM50Q86XT4 487 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 SAMD14Q8IZD0 417 aaPredicted RBP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 MRPL50Q8N5N7 158 aaKnown RBP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 LINS1Q8NG48 757 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 PLEKHO2Q8TD55 490 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 ATXN2LQ8WWM7 1075 aaKnown RBP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 CFAP36Q96G28 342 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 NSMCE3Q96MG7 304 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 C12orf10Q9HB07 376 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 EIF2AK4Q9P2K8 1649 aaKnown RBP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 MAP3K15Q6ZN16 1313 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 PFDN6O15212 129 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 TOMM70O94826 608 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 NAT2P11245 290 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 IDEP14735 1019 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 THOP1P52888 689 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 GRIN1Q05586 938 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 ESCO1Q5FWF5 840 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 OLFML2BQ68BL8 750 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 DDX42Q86XP3 938 aaKnown RBP eCLIP4.49□□□□□ -1.699e-8■■■■■ 81.4
NEDD4-201ENST00000338963 CARNMT1Q8N4J0 409 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 NAT14Q8WUY8 206 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 RILPL2Q969X0 211 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 IFT43Q96FT9 208 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 COG3Q96JB2 828 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 COX4I2Q96KJ9 171 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 ARHGEF3Q9NR81 526 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 PCF11O94913 1555 aaKnown RBP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 FADS2P1A8MWK0 482 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 TNFRSF10AO00220 468 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 DNM1LO00429 736 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 MFAP3LO75121 409 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 NR1I2O75469 434 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 DCTN3O75935 186 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 FGFR1OPO95684 399 aaKnown RBP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 CMA1P23946 247 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 TKTP29401 623 aaKnown RBP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 CTNNA1P35221 906 aaKnown RBP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 COG7P83436 770 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 PSMD6Q15008 389 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 CEP78Q5JTW2 689 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 C6orf118Q5T5N4 469 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 Q6ZNX1 250 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 CSGALNACT2Q8N6G5 542 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 USP15Q9Y4E8 981 aaPredicted RBP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 LRRC10BA6NIK2 292 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 SNTNA6NMZ2 147 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 PDHA1P08559 390 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 HSPA1LP34931 641 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 BNIP1Q12981 228 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 PTK2BQ14289 1009 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ZNF572Q7Z3I7 529 aaPredicted RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 FERMT3Q86UX7 667 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 SLC15A3Q8IY34 581 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 TMCO5AQ8N6Q1 288 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 SNX29Q8TEQ0 813 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 UBAC1Q9BSL1 405 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 CRNNQ9UBG3 495 aaPredicted RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ACAD8Q9UKU7 415 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 POLR1AO95602 1720 aaPredicted RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ARHGEF11O15085 1522 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 TMEM114B3SHH9 223 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 CASQ2O14958 399 aaPredicted RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 SULT1B1O43704 296 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 TSPAN9O75954 239 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 AGTP01019 485 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 LMOD1P29536 600 aaPredicted RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 HPDP32754 393 aaPredicted RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 WASHC5Q12768 1159 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 TRAP1Q12931 704 aaKnown RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 NR1D2Q14995 579 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ARL13BQ3SXY8 428 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ZNF598Q86UK7 904 aaKnown RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 TC2NQ8N9U0 490 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 PYROXD1Q8WU10 500 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 USP28Q96RU2 1077 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 MMS19Q96T76 1030 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 C2orf49Q9BVC5 232 aaPredicted RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 TMEM60Q9H2L4 133 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ZSWIM6Q9HCJ5 1215 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 DNAJB4Q9UDY4 337 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 LZTS1Q9Y250 596 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 EFR3BQ9Y2G0 817 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ATP11BQ9Y2G3 1177 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 NUMBLQ9Y6R0 609 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ECE2O60344 883 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ATP9AO75110 1047 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ZBED1O96006 694 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms