RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 HDAC9Q9UKV0 1011 aa14.16□□□□□ -0.14
HMGCS1-201ENST00000325110 XRCC5P13010 732 aaKnown RBP14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 LRRC55Q6ZSA7 311 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 VPS36Q86VN1 386 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 SFR1Q86XK3 245 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 MTMR9Q96QG7 549 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 DPH5Q9H2P9 285 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 DNM3Q9UQ16 869 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 ATP6V0A2Q9Y487 856 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 SHANK3Q9BYB0 1731 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 CACNA1SQ13698 1873 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 FAM153BP0C7A2 387 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 FXR2P51116 673 aaKnown RBP eCLIP14.15□□□□□ -0.142e-11■■■□□ 16.3
HMGCS1-201ENST00000325110 IRAK1P51617 712 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 ZNF543Q08ER8 600 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 KCNMA1Q12791 1236 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 TRADDQ15628 312 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 SHROOM1Q2M3G4 852 aaPredicted RBP14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 QRICH1Q2TAL8 776 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 FAM153CQ494X1 144 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 KLHDC7AQ5VTJ3 777 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 DDX42Q86XP3 938 aaKnown RBP eCLIP14.15□□□□□ -0.145e-42■□□□□ 11
HMGCS1-201ENST00000325110 TBC1D22AQ8WUA7 517 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 ZIM3Q96PE6 472 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 PPANQ9NQ55 473 aaKnown RBP14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 FAM153AQ9UHL3 310 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 CNTNAP4Q9C0A0 1308 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 TULP2O00295 520 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 EXOC3L4Q17RC7 722 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 FIGNQ5HY92 759 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 ERMNQ8TAM6 284 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 BAP1Q92560 729 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 IQCDQ96DY2 449 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 ANO3Q9BYT9 981 aa14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 DDX4Q9NQI0 724 aaKnown RBP14.15□□□□□ -0.14
HMGCS1-201ENST00000325110 TMEM110-MUSTN1A8MSY1 372 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 AGPSO00116 658 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 RHBDL3P58872 404 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 LLGL1Q15334 1064 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 ZYXQ15942 572 aaKnown RBP14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 TBC1D10BQ4KMP7 808 aaPredicted RBP14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 PEX26Q7Z412 305 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 MMGT1Q8N4V1 131 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 TBC1D16Q8TBP0 767 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 PIGOQ8TEQ8 1089 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 ZNF622Q969S3 477 aaKnown RBP eCLIP14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 BHMT2Q9H2M3 363 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 DBNDD1Q9H9R9 158 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 ANKRD36CQ5JPF3 1778 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 GOLGA8KD6RF30 607 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 ZBTB5O15062 677 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 GUCY1A3Q02108 690 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 ARHGAP44Q17R89 818 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 SLFN13Q68D06 897 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 GJB7Q6PEY0 223 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 DAAM2Q86T65 1068 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 CERS3Q8IU89 383 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 DDX47Q9H0S4 455 aaKnown RBP14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 RIOX1Q9H6W3 641 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 KDM3AQ9Y4C1 1321 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 DOT1LQ8TEK3 1739 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 IFFO1Q0D2I5 559 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 NFIAQ12857 509 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 EMBQ6PCB8 327 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 TPH2Q8IWU9 490 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 OR2W6PQ8NHA6 318 aa14.14□□□□□ -0.15
HMGCS1-201ENST00000325110 BACH1O14867 736 aa14.13□□□□□ -0.15
HMGCS1-201ENST00000325110 GFPT2O94808 682 aa14.13□□□□□ -0.15
HMGCS1-201ENST00000325110 CYP2J2P51589 502 aa14.13□□□□□ -0.15
HMGCS1-201ENST00000325110 PSMD2Q13200 908 aa14.13□□□□□ -0.15
HMGCS1-201ENST00000325110 PDIA5Q14554 519 aa14.13□□□□□ -0.15
HMGCS1-201ENST00000325110 CDC37Q16543 378 aaPredicted RBP14.13□□□□□ -0.15
HMGCS1-201ENST00000325110 ALKBH5Q6P6C2 394 aaKnown RBP14.13□□□□□ -0.15
HMGCS1-201ENST00000325110 HAS1Q92839 578 aa14.13□□□□□ -0.15
HMGCS1-201ENST00000325110 LRP5O75197 1615 aa14.13□□□□□ -0.15
HMGCS1-201ENST00000325110 RSPH10B2B2RC85 870 aa14.13□□□□□ -0.15
HMGCS1-201ENST00000325110 FAM13AO94988 1023 aa14.13□□□□□ -0.15
HMGCS1-201ENST00000325110 CFBP00751 764 aa14.13□□□□□ -0.15
HMGCS1-201ENST00000325110 RSPH10BP0C881 870 aa14.13□□□□□ -0.15
HMGCS1-201ENST00000325110 AARSP49588 968 aaKnown RBP eCLIP14.13□□□□□ -0.153e-6■□□□□ 9.9
HMGCS1-201ENST00000325110 PSMC6P62333 389 aa14.13□□□□□ -0.15
HMGCS1-201ENST00000325110 AENQ8WTP8 325 aaKnown RBP14.13□□□□□ -0.15
HMGCS1-201ENST00000325110 TLDC2A0PJX2 215 aa14.12□□□□□ -0.15
HMGCS1-201ENST00000325110 DDX39AO00148 427 aaKnown RBP14.12□□□□□ -0.15
HMGCS1-201ENST00000325110 KRIT1O00522 736 aa14.12□□□□□ -0.15
HMGCS1-201ENST00000325110 TLR2O60603 784 aa14.12□□□□□ -0.15
HMGCS1-201ENST00000325110 PPP1R11O60927 126 aaPredicted RBP14.12□□□□□ -0.15
HMGCS1-201ENST00000325110 MED24O75448 989 aa14.12□□□□□ -0.15
HMGCS1-201ENST00000325110 EPB41P11171 864 aaKnown RBP14.12□□□□□ -0.15
HMGCS1-201ENST00000325110 CASP5P51878 434 aa14.12□□□□□ -0.15
HMGCS1-201ENST00000325110 PTK2Q05397 1052 aa14.12□□□□□ -0.15
HMGCS1-201ENST00000325110 MYCT1Q8N699 235 aa14.12□□□□□ -0.15
HMGCS1-201ENST00000325110 PPM1EQ8WY54 764 aa14.12□□□□□ -0.15
HMGCS1-201ENST00000325110 TSKSQ9UJT2 592 aa14.12□□□□□ -0.15
HMGCS1-201ENST00000325110 CDK17Q00537 523 aa14.12□□□□□ -0.15
HMGCS1-201ENST00000325110 SLC18A3Q16572 532 aa14.12□□□□□ -0.15
HMGCS1-201ENST00000325110 GPATCH4Q5T3I0 446 aaKnown RBP14.12□□□□□ -0.15
HMGCS1-201ENST00000325110 KSR1Q8IVT5 923 aa14.12□□□□□ -0.15
HMGCS1-201ENST00000325110 SYCP3Q8IZU3 236 aa14.12□□□□□ -0.15
HMGCS1-201ENST00000325110 SCFD1Q8WVM8 642 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms