RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ABCC12Q96J65 1359 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 CFAP73A6NFT4 308 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 DCTN3O75935 186 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 ECEL1O95672 775 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 CYP4A11Q02928 519 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 ADCY1Q08828 1119 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 CC2D2BQ6DHV5 1058 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 KRT27Q7Z3Y8 459 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 DGKHQ86XP1 1220 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 GRAMD1CQ8IYS0 662 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 PCDHB6Q9Y5E3 794 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 NRXN1Q9ULB1 1477 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 MROH2AA6NES4 1674 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 NBPF26B4DH59 902 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 CCDC188H7C350 402 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 SNAP23O00161 211 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 ESRRAP11474 423 aaPredicted RBP12.45□□□□□ -0.42
VPS39-201ENST00000318006 BFSP1Q12934 665 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 TRIM28Q13263 835 aaKnown RBP12.45□□□□□ -0.42
VPS39-201ENST00000318006 DRP2Q13474 957 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 RPS6KA2Q15349 733 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 TMED2Q15363 201 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 C10orf76Q5T2E6 689 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 NBPF15Q8N660 670 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 THAP9Q9H5L6 903 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 CSADQ9Y600 493 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 ZC3H13Q5T200 1668 aaKnown RBP12.45□□□□□ -0.42
VPS39-201ENST00000318006 FAM170AA1A519 330 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 CTIFO43310 598 aaKnown RBP12.45□□□□□ -0.42
VPS39-201ENST00000318006 INHBAP08476 426 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 TNNI1P19237 187 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 ELF1P32519 619 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 KIF11P52732 1056 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 SLC12A2P55011 1212 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 SLC8A3P57103 927 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 MUM1L1Q5H9M0 696 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 KCTD1Q719H9 257 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 TBC1D10CQ8IV04 446 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 PDZD8Q8NEN9 1154 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 DHX36Q9H2U1 1008 aaKnown RBP12.45□□□□□ -0.42
VPS39-201ENST00000318006 BATF3Q9NR55 127 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 PTPRUQ92729 1446 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 VWDEQ8N2E2 1590 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 KIAA1210Q9ULL0 1709 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 PREX1Q8TCU6 1659 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 DAPK3O43293 454 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 TRPA1O75762 1119 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 CHGBP05060 677 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 MYL1P05976 194 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 ATF7P17544 494 aaPredicted RBP12.44□□□□□ -0.42
VPS39-201ENST00000318006 FAM102BQ5T8I3 360 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 USP17L2Q6R6M4 530 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 LRRC43Q8N309 656 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 COG1Q8WTW3 980 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 FGFR1OP2Q9NVK5 253 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 NARFQ9UHQ1 456 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 CCPG1Q9ULG6 757 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 MEFVO15553 781 aaPredicted RBP12.44□□□□□ -0.42
VPS39-201ENST00000318006 RANBP1P43487 201 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 USP14P54578 494 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 SATB1Q01826 763 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 XKR9Q5GH70 373 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 SPICE1Q8N0Z3 855 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 GDAP1Q8TB36 358 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 DEPTORQ8TB45 409 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 GLG1Q92896 1179 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 IFT122Q9HBG6 1241 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 PSD3Q9NYI0 1048 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 EPS15L1Q9UBC2 864 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 DEPDC5O75140 1603 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 CD19P15391 556 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 MSH2P43246 934 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 MESDQ14696 234 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 TMED8Q6PL24 325 aaPredicted RBP12.44□□□□□ -0.42
VPS39-201ENST00000318006 ARHGAP18Q8N392 663 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.44□□□□□ -0.42
VPS39-201ENST00000318006 FAM167BQ9BTA0 163 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 KCNF1Q9H3M0 494 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 MINPP1Q9UNW1 487 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 ZDHHC9Q9Y397 364 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 WDR19Q8NEZ3 1342 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 CLRN2A0PK11 232 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 USP17L3A6NCW0 530 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 USP17L4A6NCW7 530 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 RASSF10A6NK89 507 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 K7ENM7 598 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 FOXO4P98177 505 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 ASPHQ12797 758 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 KRT31Q15323 416 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 USP17L1Q7RTZ2 530 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 LRGUKQ96M69 825 aa12.44□□□□□ -0.42
VPS39-201ENST00000318006 APOEP02649 317 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 SLC16A2P36021 539 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 DR1Q01658 176 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 RABL6Q3YEC7 729 aaPredicted RBP12.43□□□□□ -0.42
VPS39-201ENST00000318006 PGBD1Q96JS3 809 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 HAUS8Q9BT25 410 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 OVOS2A0A0J9YW53 1432 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 OVOS2Q6IE36 1432 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 H0Y3Z8 333 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms