RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 HADHQ16836 314 aaKnown RBP9.4□□□□□ -0.91
USF3-201ENST00000316407 PGBD1Q96JS3 809 aa9.4□□□□□ -0.91
USF3-201ENST00000316407 EPN3Q9H201 632 aa9.4□□□□□ -0.91
USF3-201ENST00000316407 TCP11X1B4DZS4 312 aa9.4□□□□□ -0.91
USF3-201ENST00000316407 ALDH1L1O75891 902 aa9.4□□□□□ -0.91
USF3-201ENST00000316407 RNF207Q6ZRF8 634 aa9.4□□□□□ -0.91
USF3-201ENST00000316407 SMCO2A6NFE2 343 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 PFKFB2O60825 505 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 CMA1P23946 247 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 SERPINB10P48595 397 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 ALDH18A1P54886 795 aaKnown RBP9.39□□□□□ -0.91
USF3-201ENST00000316407 BBS9Q3SYG4 887 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 ADAM33Q9BZ11 813 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 APOBEC2Q9Y235 224 aaKnown RBP9.39□□□□□ -0.91
USF3-201ENST00000316407 TRPM2O94759 1503 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 IRS4O14654 1257 aaPredicted RBP9.39□□□□□ -0.91
USF3-201ENST00000316407 TCP10Q12799 353 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 PCDHA5Q9Y5H7 936 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 CAPN1P07384 714 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 TPP2P29144 1249 aaPredicted RBP9.39□□□□□ -0.91
USF3-201ENST00000316407 ATP6V1E1P36543 226 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 ADCK5Q3MIX3 580 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 NSMFQ6X4W1 530 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 CPXCR1Q8N123 301 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 PYROXD1Q8WU10 500 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 NPHS2Q9NP85 383 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 TTC7AQ9ULT0 858 aaPredicted RBP9.39□□□□□ -0.91
USF3-201ENST00000316407 DMP1Q13316 513 aaPredicted RBP9.39□□□□□ -0.91
USF3-201ENST00000316407 MAN1B1Q9UKM7 699 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 KDM3AQ9Y4C1 1321 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 LZTS3O60299 673 aaPredicted RBP9.39□□□□□ -0.91
USF3-201ENST00000316407 CCDC142Q17RM4 750 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 ZBED2Q9BTP6 218 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 SFI1A8K8P3 1242 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 TTI1O43156 1089 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 DDX42Q86XP3 938 aaKnown RBP eCLIP9.39□□□□□ -0.91
USF3-201ENST00000316407 TAGAPQ8N103 731 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 OTULINQ96BN8 352 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 KIFC3Q9BVG8 833 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 HPS4Q9NQG7 708 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 GTPBP6O43824 516 aaPredicted RBP9.39□□□□□ -0.91
USF3-201ENST00000316407 P4HA1P13674 534 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 CACNB1Q02641 598 aaPredicted RBP9.39□□□□□ -0.91
USF3-201ENST00000316407 TRIM25Q14258 630 aaKnown RBP9.39□□□□□ -0.91
USF3-201ENST00000316407 RARS2Q5T160 578 aaKnown RBP9.39□□□□□ -0.91
USF3-201ENST00000316407 IFNL2Q8IZJ0 200 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 MIS12Q9H081 205 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 ZWILCHQ9H900 591 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 UBN1Q9NPG3 1134 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 KRT4P19013 534 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 SLC1A4P43007 532 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 LRRC41Q15345 812 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 ANKRD2Q9GZV1 360 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 DLGAP2Q9P1A6 1054 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 TSR3Q9UJK0 312 aaKnown RBP9.39□□□□□ -0.91
USF3-201ENST00000316407 UBE4BO95155 1302 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 COPB2P35606 906 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 PGM1P36871 562 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 PRAMEP78395 509 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 MKRN4PQ13434 485 aaPredicted RBP9.39□□□□□ -0.91
USF3-201ENST00000316407 ANO4Q32M45 955 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 TJAP1Q5JTD0 557 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 PHF20L1A8MW92 1017 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 NCK2O43639 380 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 DLGAP3O95886 979 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 SLC38A10Q9HBR0 1119 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 KIF1BO60333 1816 aa9.39□□□□□ -0.91
USF3-201ENST00000316407 ITGA6P23229 1130 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 NSUN2Q08J23 767 aaKnown RBP eCLIP9.38□□□□□ -0.91
USF3-201ENST00000316407 ZNF654Q8IZM8 581 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 B4GALNT2Q8NHY0 566 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 SAYSD1Q9NPB0 183 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 SLC52A1Q9NWF4 448 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 HSPH1Q92598 858 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 BTBD6Q96KE9 485 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 TRPC6Q9Y210 931 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 OATP04181 439 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 ENO1P06733 434 aaKnown RBP9.38□□□□□ -0.91
USF3-201ENST00000316407 CTCFP49711 727 aaPredicted RBP9.38□□□□□ -0.91
USF3-201ENST00000316407 EIF4A2Q14240 407 aaKnown RBP9.38□□□□□ -0.91
USF3-201ENST00000316407 THEMISQ8N1K5 641 aaPredicted RBP9.38□□□□□ -0.91
USF3-201ENST00000316407 CNBD2Q96M20 576 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 TUBB6Q9BUF5 446 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 NAF1Q96HR8 494 aaKnown RBP9.38□□□□□ -0.91
USF3-201ENST00000316407 RPS6KC1Q96S38 1066 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 ATP5HO75947 161 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 ADD1P35611 737 aaKnown RBP9.38□□□□□ -0.91
USF3-201ENST00000316407 LINS1Q8NG48 757 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 THOC2Q8NI27 1593 aaKnown RBP9.38□□□□□ -0.91
USF3-201ENST00000316407 ATXN7L3BQ96GX2 97 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 C6orf203Q9P0P8 240 aaPredicted RBP9.38□□□□□ -0.91
USF3-201ENST00000316407 TLK1Q9UKI8 766 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 FGFR4P22455 802 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 GRK2P25098 689 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 LRRC8EQ6NSJ5 796 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 SIKE1Q9BRV8 207 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 AOX1Q06278 1338 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 DCAF8L1A6NGE4 600 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 LIG4P49917 911 aa9.38□□□□□ -0.91
USF3-201ENST00000316407 MTHFSDQ2M296 383 aaKnown RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms