RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 METTL7BQ6UX53 244 aa20.47■□□□□ 0.87
HMGA1-201ENST00000311487 TRIM50Q86XT4 487 aa20.47■□□□□ 0.87
HMGA1-201ENST00000311487 PLIN2Q99541 437 aa20.47■□□□□ 0.87
HMGA1-201ENST00000311487 TCEAL9Q9UHQ7 104 aa20.47■□□□□ 0.87
HMGA1-201ENST00000311487 PCDHA7Q9UN72 937 aa20.47■□□□□ 0.87
HMGA1-201ENST00000311487 TBX3O15119 743 aa20.46■□□□□ 0.87
HMGA1-201ENST00000311487 ZNF286BP0CG31 522 aa20.46■□□□□ 0.87
HMGA1-201ENST00000311487 CYP4A11Q02928 519 aa20.46■□□□□ 0.87
HMGA1-201ENST00000311487 RIT2Q99578 217 aa20.46■□□□□ 0.87
HMGA1-201ENST00000311487 AP5M1Q9H0R1 490 aa20.46■□□□□ 0.87
HMGA1-201ENST00000311487 RGL1Q9NZL6 768 aa20.46■□□□□ 0.87
HMGA1-201ENST00000311487 NRBP1Q9UHY1 535 aa20.46■□□□□ 0.87
HMGA1-201ENST00000311487 RCOR1Q9UKL0 485 aa20.46■□□□□ 0.87
HMGA1-201ENST00000311487 DUSP11O75319 330 aaKnown RBP20.45■□□□□ 0.86
HMGA1-201ENST00000311487 BANK1Q8NDB2 785 aa20.45■□□□□ 0.86
HMGA1-201ENST00000311487 EPSTI1Q96J88 318 aa20.45■□□□□ 0.86
HMGA1-201ENST00000311487 GPR20Q99678 358 aa20.45■□□□□ 0.86
HMGA1-201ENST00000311487 PANK2Q9BZ23 570 aa20.45■□□□□ 0.86
HMGA1-201ENST00000311487 GSTTP1A0A1W2PQM5 241 aa20.45■□□□□ 0.86
HMGA1-201ENST00000311487 GOLGA6L22H0YM25 854 aa20.45■□□□□ 0.86
HMGA1-201ENST00000311487 CTAGE5O15320 804 aa20.45■□□□□ 0.86
HMGA1-201ENST00000311487 YEATS4O95619 227 aa20.45■□□□□ 0.86
HMGA1-201ENST00000311487 TCF7P36402 384 aaPredicted RBP20.45■□□□□ 0.86
HMGA1-201ENST00000311487 ORC2Q13416 577 aaPredicted RBP20.45■□□□□ 0.86
HMGA1-201ENST00000311487 LAMC2Q13753 1193 aa20.45■□□□□ 0.86
HMGA1-201ENST00000311487 GNASQ5JWF2 1037 aa20.45■□□□□ 0.86
HMGA1-201ENST00000311487 MIER3Q7Z3K6 550 aa20.45■□□□□ 0.86
HMGA1-201ENST00000311487 KRI1Q8N9T8 703 aaKnown RBP20.45■□□□□ 0.86
HMGA1-201ENST00000311487 DISC1Q9NRI5 854 aa20.45■□□□□ 0.86
HMGA1-201ENST00000311487 LRWD1Q9UFC0 647 aa20.45■□□□□ 0.86
HMGA1-201ENST00000311487 LAD1O00515 517 aa20.44■□□□□ 0.86
HMGA1-201ENST00000311487 CTTNQ14247 550 aaKnown RBP20.44■□□□□ 0.86
HMGA1-201ENST00000311487 TMEM266Q2M3C6 531 aa20.44■□□□□ 0.86
HMGA1-201ENST00000311487 ATL3Q6DD88 541 aa20.44■□□□□ 0.86
HMGA1-201ENST00000311487 SWSAP1Q6NVH7 229 aa20.44■□□□□ 0.86
HMGA1-201ENST00000311487 SCAND2PQ9GZW5 306 aaPredicted RBP20.44■□□□□ 0.86
HMGA1-201ENST00000311487 SRPRBQ9Y5M8 271 aaKnown RBP20.44■□□□□ 0.86
HMGA1-201ENST00000311487 NFASCO94856 1347 aa20.44■□□□□ 0.86
HMGA1-201ENST00000311487 BACH1O14867 736 aa20.43■□□□□ 0.86
HMGA1-201ENST00000311487 MARK3P27448 753 aa20.43■□□□□ 0.86
HMGA1-201ENST00000311487 PPP2R5CQ13362 524 aa20.43■□□□□ 0.86
HMGA1-201ENST00000311487 FSCN1Q16658 493 aaKnown RBP20.43■□□□□ 0.86
HMGA1-201ENST00000311487 UGCGQ16739 394 aa20.43■□□□□ 0.86
HMGA1-201ENST00000311487 GIMAP8Q8ND71 665 aaPredicted RBP20.43■□□□□ 0.86
HMGA1-201ENST00000311487 SH2D3AQ9BRG2 576 aa20.43■□□□□ 0.86
HMGA1-201ENST00000311487 PAK6Q9NQU5 681 aaPredicted RBP20.43■□□□□ 0.86
HMGA1-201ENST00000311487 KIAA0100Q14667 2235 aaKnown RBP20.43■□□□□ 0.86
HMGA1-201ENST00000311487 GADD45BO75293 160 aaPredicted RBP20.43■□□□□ 0.86
HMGA1-201ENST00000311487 BMP15O95972 392 aa20.43■□□□□ 0.86
HMGA1-201ENST00000311487 MMP3P08254 477 aa20.43■□□□□ 0.86
HMGA1-201ENST00000311487 MYL3P08590 195 aa20.43■□□□□ 0.86
HMGA1-201ENST00000311487 PRPHP41219 470 aa20.43■□□□□ 0.86
HMGA1-201ENST00000311487 FXR2P51116 673 aaKnown RBP eCLIP20.43■□□□□ 0.86
HMGA1-201ENST00000311487 SKOR2Q2VWA4 1001 aaPredicted RBP20.43■□□□□ 0.86
HMGA1-201ENST00000311487 ARL6IP4Q66PJ3 421 aaKnown RBP20.43■□□□□ 0.86
HMGA1-201ENST00000311487 CCDC60Q8IWA6 550 aaPredicted RBP20.43■□□□□ 0.86
HMGA1-201ENST00000311487 KCNG4Q8TDN1 519 aa20.43■□□□□ 0.86
HMGA1-201ENST00000311487 ARMC5Q96C12 935 aa20.43■□□□□ 0.86
HMGA1-201ENST00000311487 WRAP73Q9P2S5 460 aaPredicted RBP20.43■□□□□ 0.86
HMGA1-201ENST00000311487 ELP1O95163 1332 aa20.42■□□□□ 0.86
HMGA1-201ENST00000311487 TMEM150BA6NC51 233 aa20.42■□□□□ 0.86
HMGA1-201ENST00000311487 ZBTB39O15060 712 aa20.42■□□□□ 0.86
HMGA1-201ENST00000311487 NKRFO15226 690 aaKnown RBP eCLIP20.42■□□□□ 0.861e-6■□□□□ 10.1
HMGA1-201ENST00000311487 PRPF40AO75400 957 aaKnown RBP20.42■□□□□ 0.86
HMGA1-201ENST00000311487 KRT76Q01546 638 aa20.42■□□□□ 0.86
HMGA1-201ENST00000311487 ECM1Q16610 540 aa20.42■□□□□ 0.86
HMGA1-201ENST00000311487 AXDND1Q5T1B0 1012 aaPredicted RBP20.42■□□□□ 0.86
HMGA1-201ENST00000311487 B3GNT9Q6UX72 402 aa20.42■□□□□ 0.86
HMGA1-201ENST00000311487 TPH2Q8IWU9 490 aa20.42■□□□□ 0.86
HMGA1-201ENST00000311487 IGSF22Q8N9C0 903 aa20.42■□□□□ 0.86
HMGA1-201ENST00000311487 PPTC7Q8NI37 304 aa20.42■□□□□ 0.86
HMGA1-201ENST00000311487 FERMT2Q96AC1 680 aa20.42■□□□□ 0.86
HMGA1-201ENST00000311487 DYDC2Q96IM9 177 aa20.42■□□□□ 0.86
HMGA1-201ENST00000311487 PCYT2Q99447 389 aa20.42■□□□□ 0.86
HMGA1-201ENST00000311487 EIF2AK1Q9BQI3 630 aaKnown RBP20.42■□□□□ 0.86
HMGA1-201ENST00000311487 GABBR1Q9UBS5 961 aa20.42■□□□□ 0.86
HMGA1-201ENST00000311487 PPP6R2O75170 966 aa20.41■□□□□ 0.86
HMGA1-201ENST00000311487 ADAMTS4O75173 837 aa20.41■□□□□ 0.86
HMGA1-201ENST00000311487 KCNA10Q16322 511 aa20.41■□□□□ 0.86
HMGA1-201ENST00000311487 ZNF746Q6NUN9 644 aaPredicted RBP20.41■□□□□ 0.86
HMGA1-201ENST00000311487 SHC4Q6S5L8 630 aa20.41■□□□□ 0.86
HMGA1-201ENST00000311487 CXCL17Q6UXB2 119 aa20.41■□□□□ 0.86
HMGA1-201ENST00000311487 ABHD15Q6UXT9 468 aa20.41■□□□□ 0.86
HMGA1-201ENST00000311487 SEPT1Q8WYJ6 367 aa20.41■□□□□ 0.86
HMGA1-201ENST00000311487 SYMPKQ92797 1274 aaKnown RBP20.41■□□□□ 0.86
HMGA1-201ENST00000311487 PCDHA10Q9Y5I2 948 aa20.41■□□□□ 0.86
HMGA1-201ENST00000311487 WDR64B1ANS9 1081 aa20.41■□□□□ 0.86
HMGA1-201ENST00000311487 RBAK-RBAKDNI3L0D1 243 aa20.41■□□□□ 0.86
HMGA1-201ENST00000311487 MED24O75448 989 aa20.41■□□□□ 0.86
HMGA1-201ENST00000311487 TFRCP02786 760 aaKnown RBP20.41■□□□□ 0.86
HMGA1-201ENST00000311487 GJA9P57773 515 aa20.41■□□□□ 0.86
HMGA1-201ENST00000311487 U2AF1L4Q8WU68 220 aaKnown RBP20.41■□□□□ 0.86
HMGA1-201ENST00000311487 GLG1Q92896 1179 aa20.41■□□□□ 0.86
HMGA1-201ENST00000311487 GZF1Q9H116 711 aaPredicted RBP20.41■□□□□ 0.86
HMGA1-201ENST00000311487 A6NJR5 290 aa20.4■□□□□ 0.86
HMGA1-201ENST00000311487 PSMC6P62333 389 aa20.4■□□□□ 0.86
HMGA1-201ENST00000311487 LRRC41Q15345 812 aa20.4■□□□□ 0.86
HMGA1-201ENST00000311487 CATSPER3Q86XQ3 398 aa20.4■□□□□ 0.86
HMGA1-201ENST00000311487 PDILTQ8N807 584 aa20.4■□□□□ 0.86
HMGA1-201ENST00000311487 SNX29Q8TEQ0 813 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms