RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 HOXC8P31273 242 aa18.61■□□□□ 0.57
LSM1-201ENST00000311351 CEP55Q53EZ4 464 aa18.61■□□□□ 0.57
LSM1-201ENST00000311351 REXO1Q8N1G1 1221 aaKnown RBP18.61■□□□□ 0.57
LSM1-201ENST00000311351 FTOQ9C0B1 505 aaKnown RBP eCLIP18.61■□□□□ 0.57
LSM1-201ENST00000311351 SEMA6BQ9H3T3 888 aa18.61■□□□□ 0.57
LSM1-201ENST00000311351 CHD9Q3L8U1 2897 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 FAM86B1E9PN63 330 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 CPLX1O14810 134 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 TREHO43280 583 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 DTNBO60941 627 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 FAM86B2P0C5J1 330 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 MARK3P27448 753 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 ZNF76P36508 570 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 ANAPC15P60006 121 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 ITGB3BPQ13352 177 aaPredicted RBP18.6■□□□□ 0.57
LSM1-201ENST00000311351 GPNMBQ14956 572 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 TRAF7Q6Q0C0 670 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 SERINC5Q86VE9 423 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 CCDC148Q8NFR7 591 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 CRYGNQ8WXF5 182 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 ATP6V0A1Q93050 837 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 TIFAQ96CG3 184 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 RNPEPQ9H4A4 650 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 JPH1Q9HDC5 661 aaPredicted RBP18.6■□□□□ 0.57
LSM1-201ENST00000311351 SETD4Q9NVD3 440 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 SLC4A7Q9Y6M7 1214 aa18.6■□□□□ 0.57
LSM1-201ENST00000311351 MYO9BQ13459 2157 aa18.59■□□□□ 0.57
LSM1-201ENST00000311351 MEIS1O00470 390 aa18.59■□□□□ 0.57
LSM1-201ENST00000311351 MAFGO15525 162 aa18.59■□□□□ 0.57
LSM1-201ENST00000311351 NBNO60934 754 aa18.59■□□□□ 0.57
LSM1-201ENST00000311351 SEC24BO95487 1268 aa18.59■□□□□ 0.57
LSM1-201ENST00000311351 SSRP1Q08945 709 aaKnown RBP18.59■□□□□ 0.57
LSM1-201ENST00000311351 ZNF618Q5T7W0 954 aa18.59■□□□□ 0.57
LSM1-201ENST00000311351 TRIM22Q8IYM9 498 aa18.59■□□□□ 0.57
LSM1-201ENST00000311351 LMBR1Q8WVP7 490 aa18.59■□□□□ 0.57
LSM1-201ENST00000311351 SEPT1Q8WYJ6 367 aa18.59■□□□□ 0.57
LSM1-201ENST00000311351 UIMC1Q96RL1 719 aa18.59■□□□□ 0.57
LSM1-201ENST00000311351 SDF4Q9BRK5 362 aa18.59■□□□□ 0.57
LSM1-201ENST00000311351 AGO4Q9HCK5 861 aaKnown RBP18.59■□□□□ 0.57
LSM1-201ENST00000311351 SLC9A2Q9UBY0 812 aa18.59■□□□□ 0.57
LSM1-201ENST00000311351 STXBP5LQ9Y2K9 1186 aa18.59■□□□□ 0.57
LSM1-201ENST00000311351 SIP14410 1827 aa18.58■□□□□ 0.57
LSM1-201ENST00000311351 NFASCO94856 1347 aa18.58■□□□□ 0.57
LSM1-201ENST00000311351 IGLV3-22A0A075B6J6 115 aa18.58■□□□□ 0.56
LSM1-201ENST00000311351 TMEM265A0A087WTH1 108 aa18.58■□□□□ 0.56
LSM1-201ENST00000311351 DDX39AO00148 427 aaKnown RBP18.58■□□□□ 0.56
LSM1-201ENST00000311351 GNA11P29992 359 aa18.58■□□□□ 0.56
LSM1-201ENST00000311351 RABGGTBP53611 331 aa18.58■□□□□ 0.56
LSM1-201ENST00000311351 SCRN1Q12765 414 aa18.58■□□□□ 0.56
LSM1-201ENST00000311351 MBTPS1Q14703 1052 aa18.58■□□□□ 0.56
LSM1-201ENST00000311351 TCTN1Q2MV58 587 aa18.58■□□□□ 0.56
LSM1-201ENST00000311351 PLA2G4DQ86XP0 818 aa18.58■□□□□ 0.56
LSM1-201ENST00000311351 MYLIPQ8WY64 445 aa18.58■□□□□ 0.56
LSM1-201ENST00000311351 AIFM3Q96NN9 605 aa18.58■□□□□ 0.56
LSM1-201ENST00000311351 PCYT2Q99447 389 aa18.58■□□□□ 0.56
LSM1-201ENST00000311351 CDX2Q99626 313 aaPredicted RBP18.58■□□□□ 0.56
LSM1-201ENST00000311351 TPCN1Q9ULQ1 816 aa18.58■□□□□ 0.56
LSM1-201ENST00000311351 YBX2Q9Y2T7 364 aaKnown RBP18.58■□□□□ 0.56
LSM1-201ENST00000311351 EMSYQ7Z589 1322 aa18.57■□□□□ 0.56
LSM1-201ENST00000311351 CYP3A4P08684 503 aa18.57■□□□□ 0.56
LSM1-201ENST00000311351 ACTN1P12814 892 aa18.57■□□□□ 0.56
LSM1-201ENST00000311351 THPOP40225 353 aa18.57■□□□□ 0.56
LSM1-201ENST00000311351 AK2P54819 239 aa18.57■□□□□ 0.56
LSM1-201ENST00000311351 NLRP5P59047 1200 aa18.57■□□□□ 0.56
LSM1-201ENST00000311351 ACTR2P61160 394 aa18.57■□□□□ 0.56
LSM1-201ENST00000311351 GLG1Q92896 1179 aa18.57■□□□□ 0.56
LSM1-201ENST00000311351 NKX2-4Q9H2Z4 354 aa18.57■□□□□ 0.56
LSM1-201ENST00000311351 MICAL3Q7RTP6 2002 aa18.57■□□□□ 0.56
LSM1-201ENST00000311351 LGR5O75473 907 aa18.56■□□□□ 0.56
LSM1-201ENST00000311351 DEXIO95424 95 aa18.56■□□□□ 0.56
LSM1-201ENST00000311351 CXCL10P02778 98 aa18.56■□□□□ 0.56
LSM1-201ENST00000311351 CTSHP09668 335 aa18.56■□□□□ 0.56
LSM1-201ENST00000311351 MYOGP15173 224 aa18.56■□□□□ 0.56
LSM1-201ENST00000311351 ATP2A2P16615 1042 aaKnown RBP18.56■□□□□ 0.56
LSM1-201ENST00000311351 ADAM17P78536 824 aa18.56■□□□□ 0.56
LSM1-201ENST00000311351 CPLX2Q6PUV4 134 aaKnown RBP18.56■□□□□ 0.56
LSM1-201ENST00000311351 NIPA1Q7RTP0 329 aa18.56■□□□□ 0.56
LSM1-201ENST00000311351 BICD2Q8TD16 824 aa18.56■□□□□ 0.56
LSM1-201ENST00000311351 SLKQ9H2G2 1235 aaPredicted RBP18.56■□□□□ 0.56
LSM1-201ENST00000311351 ZNF576Q9H609 170 aa18.56■□□□□ 0.56
LSM1-201ENST00000311351 SH3GLB2Q9NR46 395 aa18.56■□□□□ 0.56
LSM1-201ENST00000311351 ERAP1Q9NZ08 941 aa18.56■□□□□ 0.56
LSM1-201ENST00000311351 LARGE1O95461 756 aa18.55■□□□□ 0.56
LSM1-201ENST00000311351 CCNE2O96020 404 aa18.55■□□□□ 0.56
LSM1-201ENST00000311351 PPFIA1Q13136 1202 aa18.55■□□□□ 0.56
LSM1-201ENST00000311351 GRIN2CQ14957 1233 aa18.55■□□□□ 0.56
LSM1-201ENST00000311351 RAB30Q15771 203 aa18.55■□□□□ 0.56
LSM1-201ENST00000311351 MCTP2Q6DN12 878 aa18.55■□□□□ 0.56
LSM1-201ENST00000311351 IL17RAQ96F46 866 aa18.55■□□□□ 0.56
LSM1-201ENST00000311351 SMARCAD1Q9H4L7 1026 aa18.55■□□□□ 0.56
LSM1-201ENST00000311351 MSRAQ9UJ68 235 aa18.55■□□□□ 0.56
LSM1-201ENST00000311351 CHD7Q9P2D1 2997 aa18.55■□□□□ 0.56
LSM1-201ENST00000311351 WDR81Q562E7 1941 aa18.55■□□□□ 0.56
LSM1-201ENST00000311351 NRCAMQ92823 1304 aa18.54■□□□□ 0.56
LSM1-201ENST00000311351 EYSQ5T1H1 3165 aa18.54■□□□□ 0.56
LSM1-201ENST00000311351 RSPH10B2B2RC85 870 aa18.54■□□□□ 0.56
LSM1-201ENST00000311351 PFKFB2O60825 505 aa18.54■□□□□ 0.56
LSM1-201ENST00000311351 RSPH10BP0C881 870 aa18.54■□□□□ 0.56
LSM1-201ENST00000311351 GNAT1P11488 350 aa18.54■□□□□ 0.56
LSM1-201ENST00000311351 SETQ01105 290 aaPredicted RBP18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms