RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 SPDYE1Q8NFV5 336 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-201ENST00000303395 LRRC8CQ8TDW0 803 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 SCG3Q8WXD2 468 aaKnown RBP5.65□□□□□ -1.51
SCN1A-201ENST00000303395 GCOM2Q9BZD3 368 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-201ENST00000303395 ABCF2Q9UG63 623 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 PCDHA7Q9UN72 937 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 ICE1Q9Y2F5 2266 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 H2AFYO75367 372 aaKnown RBP5.65□□□□□ -1.51
SCN1A-201ENST00000303395 FMNL1O95466 1100 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-201ENST00000303395 MX2P20592 715 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 PPP2R2AP63151 447 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 LAMB3Q13751 1172 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 KLC3Q6P597 504 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 CYFIP1Q7L576 1253 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 NLRP9Q7RTR0 991 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 PARD3BQ8TEW8 1205 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 UBLCP1Q8WVY7 318 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-201ENST00000303395 LPIN2Q92539 896 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 SELENOSQ9BQE4 189 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.65□□□□□ -1.51
SCN1A-201ENST00000303395 ARMCX3Q9UH62 379 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-201ENST00000303395 MAP3K2Q9Y2U5 619 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 ITSN1Q15811 1721 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 IQANK1A0A1B0GTG1 560 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 A8MXQ7 604 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 NR1I2O75469 434 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 IDH1O75874 414 aaKnown RBP5.65□□□□□ -1.51
SCN1A-201ENST00000303395 OATP04181 439 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 CLTAP09496 248 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 PTPREP23469 700 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 TFAP4Q01664 338 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 NDUFA5Q16718 116 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 WDR44Q5JSH3 913 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 PRUNE1Q86TP1 453 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 PNMA8AQ86V59 439 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-201ENST00000303395 SKA2Q8WVK7 121 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-201ENST00000303395 ARHGEF1Q92888 912 aaKnown RBP5.65□□□□□ -1.51
SCN1A-201ENST00000303395 RBM41Q96IZ5 413 aaKnown RBP5.65□□□□□ -1.51
SCN1A-201ENST00000303395 MKNK1Q9BUB5 465 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 SMIM31A0A1B0GVY4 71 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 IQCA1LA6NCM1 817 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 H0YC42 278 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 EXOC5O00471 708 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 BIRC5O15392 142 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 PRPF3O43395 683 aaKnown RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 KLHL41O60662 606 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 KRT8P05787 483 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 HNRNPH2P55795 449 aaKnown RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 MYO1EQ12965 1108 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 SPARCL1Q14515 664 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 PDS5AQ29RF7 1337 aaKnown RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 AKNAD1Q5T1N1 836 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 DGKHQ86XP1 1220 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 NOA1Q8NC60 698 aaKnown RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 TMEM206Q9H813 350 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 RSL24D1Q9UHA3 163 aaKnown RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 IPO11Q9UI26 975 aaKnown RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 GTPBP10A4D1E9 387 aaKnown RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 NPR1P16066 1061 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 IFNA8P32881 189 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 NECTIN1Q15223 517 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 MICU3Q86XE3 530 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 CCNJLQ8IV13 435 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 TAF1DQ9H5J8 278 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 STN1Q9H668 368 aaKnown RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 LMCD1Q9NZU5 365 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 KRT38O76015 456 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 EIF4A2Q14240 407 aaKnown RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 TMEM259Q4ZIN3 620 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 EFL1Q7Z2Z2 1120 aaKnown RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 GAS2L3Q86XJ1 694 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 TRIM63Q969Q1 353 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 VPS37BQ9H9H4 285 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 AP4S1Q9Y587 144 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 A0A0A6YYK5 440 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 C21orf2O43822 256 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 APOEP02649 317 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 FDX1P10109 184 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 TNFAIP3P21580 790 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 AP2B1P63010 937 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 AP1B1Q10567 949 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 AP3B2Q13367 1082 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 UAP1Q16222 522 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 ZNF804AQ7Z570 1209 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 REXO1Q8N1G1 1221 aaKnown RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 NELFBQ8WX92 580 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 FAM212AQ96EL1 285 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 CCDC8Q9H0W5 538 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 ADGRA3Q8IWK6 1321 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 ITGA9Q13797 1035 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 FAM9CQ8IZT9 166 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 ARHGEF2Q92974 986 aaKnown RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 UPF3AQ9H1J1 476 aaKnown RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 MPP6Q9NZW5 540 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 KAT6AQ92794 2004 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 SPDYE3A6NKU9 549 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 LRRIQ3A6PVS8 624 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 M0QZ92 97 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 ASAP2O43150 1006 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 GSPT1P15170 499 aaKnown RBP5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms