RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 SART1O43290 800 aaKnown RBP12.41□□□□□ -0.42
USP53-201ENST00000274030 NMT2O60551 498 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 CPP00450 1065 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 PEX3P56589 373 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 STAG1Q8WVM7 1258 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 NDST4Q9H3R1 872 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 KIF9Q9HAQ2 790 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 BNIP3LO60238 219 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 CDC25BP30305 580 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 IL9RQ01113 521 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 KRT27Q7Z3Y8 459 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 SCYL3Q8IZE3 742 aa12.41□□□□□ -0.42
USP53-201ENST00000274030 ENOX1Q8TC92 643 aaKnown RBP12.41□□□□□ -0.42
USP53-201ENST00000274030 DDX27Q96GQ7 796 aaKnown RBP12.41□□□□□ -0.42
USP53-201ENST00000274030 DHX36Q9H2U1 1008 aaKnown RBP12.41□□□□□ -0.42
USP53-201ENST00000274030 MCF2LO15068 1137 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 MMP10P09238 476 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 ZNF18P17022 549 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 PTPREP23469 700 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 HEXIM2Q96MH2 286 aaKnown RBP12.4□□□□□ -0.42
USP53-201ENST00000274030 STRBPQ96SI9 672 aaKnown RBP12.4□□□□□ -0.42
USP53-201ENST00000274030 NDUFA10O95299 355 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 XPAP23025 273 aaPredicted RBP12.4□□□□□ -0.42
USP53-201ENST00000274030 ERVK-7P63135 1459 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 LRRC4Q9HBW1 653 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 ATG3Q9NT62 314 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 PCDHA13Q9Y5I0 950 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 PFDN6O15212 129 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 LMNB2Q03252 620 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 GRAPQ13588 217 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 KIAA1841Q6NSI8 718 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 THNSL1Q8IYQ7 743 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 SLC44A5Q8NCS7 719 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 GRAPLQ8TC17 118 aaPredicted RBP12.4□□□□□ -0.42
USP53-201ENST00000274030 RUNDC3BQ96NL0 473 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 BAG5Q9UL15 447 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 PNMA6FA0A0J9YX94 578 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 FRMD3A2A2Y4 597 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 POTEMA6NI47 508 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 IRX4P78413 519 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 VSTM4Q8IW00 320 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 GDAP1Q8TB36 358 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 SPDL1Q96EA4 605 aa12.4□□□□□ -0.42
USP53-201ENST00000274030 USP6P35125 1406 aa12.4□□□□□ -0.43
USP53-201ENST00000274030 USP17L5A8MUK1 530 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 MSH2P43246 934 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 ZBED6P86452 979 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 C10orf76Q5T2E6 689 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 RSPH3Q86UC2 560 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 PDZD8Q8NEN9 1154 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 IPO11Q9UI26 975 aaKnown RBP12.39□□□□□ -0.43
USP53-201ENST00000274030 LRFN2Q9ULH4 789 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 INPP5FQ9Y2H2 1132 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 ANGPTL3Q9Y5C1 460 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 UGGT1Q9NYU2 1555 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 ERVV-1B6SEH8 477 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 SUN1O94901 812 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 ARL4AP40617 200 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 LIFRP42702 1097 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 EPHB4P54760 987 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 KRT31Q15323 416 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 MAP3K21Q5TCX8 1036 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 METTL23Q86XA0 190 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 PARD3BQ8TEW8 1205 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 JPH2Q9BR39 696 aaPredicted RBP12.39□□□□□ -0.43
USP53-201ENST00000274030 IFT122Q9HBG6 1241 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 K7ERI5 159 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 KRT3P12035 628 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 NFX1Q12986 1120 aaKnown RBP12.39□□□□□ -0.43
USP53-201ENST00000274030 BBS9Q3SYG4 887 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 TBC1D10CQ8IV04 446 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 ZWILCHQ9H900 591 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 BSDC1Q9NW68 430 aaPredicted RBP12.39□□□□□ -0.43
USP53-201ENST00000274030 TRIM49BA6NDI0 452 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 CTNND1O60716 968 aaKnown RBP12.39□□□□□ -0.43
USP53-201ENST00000274030 ZSCAN20P17040 1043 aaPredicted RBP12.39□□□□□ -0.43
USP53-201ENST00000274030 FOXD4Q12950 439 aaPredicted RBP12.39□□□□□ -0.43
USP53-201ENST00000274030 ARHGEF18Q6ZSZ5 1173 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 TCP11Q8WWU5 503 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 CFAP36Q96G28 342 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 PARD6BQ9BYG5 372 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 USP17L15C9J2P7 530 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 USP17L13C9JLJ4 530 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 USP17L11C9JVI0 530 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 USP17L18D6R9N7 530 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 USP17L22D6RA61 530 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 USP17L17D6RBQ6 530 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 USP17L19D6RCP7 530 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 USP17L20D6RJB6 530 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 USP17L24Q0WX57 530 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 USP17L6PQ6QN14 398 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 TRIM11Q96F44 468 aa12.39□□□□□ -0.43
USP53-201ENST00000274030 CCDC197Q8NCU1 140 aa12.38□□□□□ -0.43
USP53-201ENST00000274030 SLC17A8Q8NDX2 589 aa12.38□□□□□ -0.43
USP53-201ENST00000274030 MSTO1Q9BUK6 570 aa12.38□□□□□ -0.43
USP53-201ENST00000274030 VCX3AQ9NNX9 186 aa12.38□□□□□ -0.43
USP53-201ENST00000274030 SPDYE2BA6NHP3 402 aa12.38□□□□□ -0.43
USP53-201ENST00000274030 PSAPP07602 524 aa12.38□□□□□ -0.43
USP53-201ENST00000274030 SPDYE6P0CI01 402 aa12.38□□□□□ -0.43
USP53-201ENST00000274030 MX2P20592 715 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms