RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 NOD1Q9Y239 953 aa12.77□□□□□ -0.36
VPS4A-201ENST00000254950 ARHGAP6O43182 974 aa12.77□□□□□ -0.36
VPS4A-201ENST00000254950 EYA4O95677 639 aa12.77□□□□□ -0.36
VPS4A-201ENST00000254950 CDC25BP30305 580 aa12.77□□□□□ -0.36
VPS4A-201ENST00000254950 NOP2P46087 812 aaKnown RBP12.77□□□□□ -0.36
VPS4A-201ENST00000254950 PADI6Q6TGC4 694 aa12.77□□□□□ -0.36
VPS4A-201ENST00000254950 TMTC1Q8IUR5 882 aa12.77□□□□□ -0.36
VPS4A-201ENST00000254950 CCDC51Q96ER9 411 aa12.77□□□□□ -0.36
VPS4A-201ENST00000254950 KMT5AQ9NQR1 393 aa12.77□□□□□ -0.36
VPS4A-201ENST00000254950 FAM207AQ9NSI2 230 aaPredicted RBP12.77□□□□□ -0.36
VPS4A-201ENST00000254950 NFIBO00712 420 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 MAFGO15525 162 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 TUBB4AP04350 444 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 ATP1A3P13637 1013 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 CNGA1P29973 690 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 PRCPP42785 496 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 GTF2A2P52657 109 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 PPATQ06203 517 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 KIF5AQ12840 1032 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 VGLL4Q14135 290 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 ACCSQ96QU6 501 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 AP5M1Q9H0R1 490 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 THAP9Q9H5L6 903 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 FZD1Q9UP38 647 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 IRS2Q9Y4H2 1338 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 COASYQ13057 564 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 ALCAMQ13740 583 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 TAF1CQ15572 869 aaPredicted RBP12.77□□□□□ -0.37
VPS4A-201ENST00000254950 WDR44Q5JSH3 913 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 SARM1Q6SZW1 724 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 CYP26C1Q6V0L0 522 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 MCPH1Q8NEM0 835 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 OPTNQ96CV9 577 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 GBP3Q9H0R5 595 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 TMEM206Q9H813 350 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 GABBR1Q9UBS5 961 aa12.77□□□□□ -0.37
VPS4A-201ENST00000254950 GLTPD2A6NH11 291 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 VWA5AO00534 786 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 KRT86O43790 486 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 KCNA3P22001 575 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 DPYDQ12882 1025 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 TTLL4Q14679 1199 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 IQCEQ6IPM2 695 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 SFR1Q86XK3 245 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 FAM167AQ96KS9 214 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 RANBP17Q9H2T7 1088 aaKnown RBP12.76□□□□□ -0.37
VPS4A-201ENST00000254950 STX10O60499 249 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 RPA1P27694 616 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 CLCN1P35523 988 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 IGBP1P78318 339 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 ARHGEF6Q15052 776 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 KCNV1Q6PIU1 500 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 PPP4R3CPQ6ZMV5 832 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 GPRC5AQ8NFJ5 357 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 KLRG1Q96E93 195 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 JPH1Q9HDC5 661 aaPredicted RBP12.76□□□□□ -0.37
VPS4A-201ENST00000254950 SLC9A2Q9UBY0 812 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 MSH4O15457 936 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 DESP17661 470 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 ABCD1P33897 745 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 OAZ1P54368 228 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 IFI16Q16666 785 aaKnown RBP12.76□□□□□ -0.37
VPS4A-201ENST00000254950 MAN2A1Q16706 1144 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 GUF1Q8N442 669 aaKnown RBP12.76□□□□□ -0.37
VPS4A-201ENST00000254950 OR8K1Q8NGG5 319 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 C7orf25Q9BPX7 421 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 NUCKS1Q9H1E3 243 aaKnown RBP12.76□□□□□ -0.37
VPS4A-201ENST00000254950 TMX1Q9H3N1 280 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 RRAGCQ9HB90 399 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 GPBP1L1Q9HC44 474 aaPredicted RBP12.76□□□□□ -0.37
VPS4A-201ENST00000254950 KCNH7Q9NS40 1196 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 SEL1LQ9UBV2 794 aa12.76□□□□□ -0.37
VPS4A-201ENST00000254950 HNRNPDLO14979 420 aaKnown RBP12.75□□□□□ -0.37
VPS4A-201ENST00000254950 SWSAP1Q6NVH7 229 aa12.75□□□□□ -0.37
VPS4A-201ENST00000254950 KCTD17Q8N5Z5 321 aa12.75□□□□□ -0.37
VPS4A-201ENST00000254950 SYTL5Q8TDW5 730 aaPredicted RBP12.75□□□□□ -0.37
VPS4A-201ENST00000254950 SFI1A8K8P3 1242 aa12.75□□□□□ -0.37
VPS4A-201ENST00000254950 PRPF6O94906 941 aaKnown RBP12.75□□□□□ -0.37
VPS4A-201ENST00000254950 TFDP1Q14186 410 aa12.75□□□□□ -0.37
VPS4A-201ENST00000254950 RETREG2Q8NC44 543 aa12.75□□□□□ -0.37
VPS4A-201ENST00000254950 DNAI1Q9UI46 699 aa12.75□□□□□ -0.37
VPS4A-201ENST00000254950 ZNF215Q9UL58 517 aaPredicted RBP12.75□□□□□ -0.37
VPS4A-201ENST00000254950 ASTN2O75129 1339 aaPredicted RBP12.75□□□□□ -0.37
VPS4A-201ENST00000254950 PITPNM2Q9BZ72 1349 aa12.75□□□□□ -0.37
VPS4A-201ENST00000254950 WNK3Q9BYP7 1800 aa12.75□□□□□ -0.37
VPS4A-201ENST00000254950 TAL1P17542 331 aaPredicted RBP12.75□□□□□ -0.37
VPS4A-201ENST00000254950 ADKP55263 362 aaKnown RBP12.75□□□□□ -0.37
VPS4A-201ENST00000254950 UBXN4Q92575 508 aa12.75□□□□□ -0.37
VPS4A-201ENST00000254950 NAA15Q9BXJ9 866 aaKnown RBP12.75□□□□□ -0.37
VPS4A-201ENST00000254950 SLC38A10Q9HBR0 1119 aa12.75□□□□□ -0.37
VPS4A-201ENST00000254950 SLC9C1Q4G0N8 1177 aa12.74□□□□□ -0.37
VPS4A-201ENST00000254950 GBP6Q6ZN66 633 aa12.74□□□□□ -0.37
VPS4A-201ENST00000254950 POMGNT1Q8WZA1 660 aa12.74□□□□□ -0.37
VPS4A-201ENST00000254950 NLRC4Q9NPP4 1024 aa12.74□□□□□ -0.37
VPS4A-201ENST00000254950 FAM184BQ9ULE4 1060 aa12.74□□□□□ -0.37
VPS4A-201ENST00000254950 PSMC2P35998 433 aaKnown RBP12.74□□□□□ -0.37
VPS4A-201ENST00000254950 SSR1P43307 286 aaKnown RBP12.74□□□□□ -0.37
VPS4A-201ENST00000254950 FAM186BQ8IYM0 893 aa12.74□□□□□ -0.37
VPS4A-201ENST00000254950 GPRASP2Q96D09 838 aa12.74□□□□□ -0.37
VPS4A-201ENST00000254950 ZNF302Q9NR11 478 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms