RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 EEF1B2P24534 225 aaKnown RBP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 RXRGP48443 463 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 PPP1R18Q6NYC8 613 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 PPP2R3CQ969Q6 453 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 FOPNLQ96NB1 174 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 USP32Q8NFA0 1604 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 CASZ1Q86V15 1759 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 EXOC1LA0A1B0GW35 172 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 GSTA4O15217 222 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 CIAO1O76071 339 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 ATP5BP06576 529 aaKnown RBP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 HOXC6P09630 235 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 RRAGAQ7L523 313 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 ST13P5Q8NFI4 369 aaPredicted RBP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 CEP95Q96GE4 821 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 GCNAQ96QF7 691 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 EPAS1Q99814 870 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 DDX50Q9BQ39 737 aaKnown RBP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 THAP9Q9H5L6 903 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 MAP3K4Q9Y6R4 1608 aa6.52□□□□□ -1.36
VPS13D-201ENST00000011700 UGP2Q16851 508 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 MRPS26Q9BYN8 205 aaKnown RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 DCDC2Q9UHG0 476 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 SMG5Q9UPR3 1016 aaKnown RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 TLR3O15455 904 aaKnown RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 EIF2S1P05198 315 aaKnown RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 C8orf34Q49A92 452 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 LRRC59Q96AG4 307 aaKnown RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 SLC38A10Q9HBR0 1119 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 PPP2R2CQ9Y2T4 447 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 ARL2BPQ9Y2Y0 163 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 SERPING1P05155 500 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 CA8P35219 290 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 CCDC15Q0P6D6 951 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 KPNB1Q14974 876 aaKnown RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 NRBP2Q9NSY0 501 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 RASSF9O75901 435 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 GNAT1P11488 350 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 XPAP23025 273 aaPredicted RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 CSTF3Q12996 717 aaKnown RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 SCFD1Q8WVM8 642 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 NAF1Q96HR8 494 aaKnown RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 PANK2Q9BZ23 570 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 GDPD2Q9HCC8 539 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 KCND2Q9NZV8 630 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 SUCLA2Q9P2R7 463 aaPredicted RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 ADCY9O60503 1353 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 PRDM15P57071 1507 aaPredicted RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 SLC27A2O14975 620 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 NR1D1P20393 614 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 MYSM1Q5VVJ2 828 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 RAPH1Q70E73 1250 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 BLIDQ8IZY5 108 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 NT5C1BQ96P26 610 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 TEKT3Q9BXF9 490 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 PRRG3Q9BZD7 231 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 TBC1D23Q9NUY8 699 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 ACEP12821 1306 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 KANSL1LA0AUZ9 987 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 GJC1P36383 396 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 TMTC4Q5T4D3 741 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 PHF21AQ96BD5 680 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 FAM167AQ96KS9 214 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 SIKE1Q9BRV8 207 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 CHD1O14646 1710 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 ST13P50502 369 aaKnown RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 SNRPFP62306 86 aaKnown RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 GNGT1P63211 74 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 MAPK8IP2Q13387 824 aaPredicted RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 TRIM68Q6AZZ1 485 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 HORMAD1Q86X24 394 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 XAGE3Q8WTP9 111 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 FAM212AQ96EL1 285 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 LARP6Q9BRS8 491 aaKnown RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 MRPL46Q9H2W6 279 aaKnown RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 IL1RAPL1Q9NZN1 696 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 PA2G4Q9UQ80 394 aaKnown RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 MLH3Q9UHC1 1453 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 IRS4O14654 1257 aaPredicted RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 ZNF263O14978 683 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 IFNB1P01574 187 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 NCKAP1LP55160 1127 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 NLRP11P59045 1033 aaKnown RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 ITPRIPL1Q6GPH6 555 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 TRIML2Q8N7C3 387 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 USP13Q92995 863 aaPredicted RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 ZSCAN10Q96SZ4 725 aaPredicted RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 TUBGCP4Q9UGJ1 667 aa6.52□□□□□ -1.37
VPS13D-201ENST00000011700 DDX25Q9UHL0 483 aaKnown RBP6.52□□□□□ -1.37
VPS13D-201ENST00000011700 MYO1DO94832 1006 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 ZBED6P86452 979 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 MRPL28Q13084 256 aaKnown RBP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 TNNI3KQ59H18 835 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 LMBR1LQ6UX01 489 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 DHX36Q9H2U1 1008 aaKnown RBP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 FPGT-TNNI3KV9GXZ4 949 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 KNTC1P50748 2209 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 PFKFB2O60825 505 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 UBE3CQ15386 1083 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms